Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e03r
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 32   0.50 
11_01_0026 + 193383-194566,195726-195972,196099-198063                 31   1.1  
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899...    29   6.1  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 25/76 (32%), Positives = 32/76 (42%)
 Frame = -1

Query: 530  GTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYK 351
            G P  KVV S    + K+Q SL  GS  +K ++    D +     P  L  LH    I  
Sbjct: 917  GCPSGKVVVSPRHFLTKIQASLCSGSI-SKRKLSMSDDQEKLQESPSSLKRLHRTSSIPF 975

Query: 350  TLVYDKKEDEPLNEGD 303
             L     EDEP +  D
Sbjct: 976  DLNLPVDEDEPFDADD 991


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/76 (31%), Positives = 32/76 (42%)
 Frame = -1

Query: 530  GTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYK 351
            G P  KVV S    + K+Q SL  GS  +K ++    D +     P     LH    +  
Sbjct: 918  GCPSGKVVVSPRHFLTKIQASLCSGSI-SKRKLSISDDQEKLQESPSSSKRLHRTSSVPF 976

Query: 350  TLVYDKKEDEPLNEGD 303
             L     EDEPL+  D
Sbjct: 977  DLNLPVDEDEPLDADD 992


>06_03_1284 -
           28988287-28988922,28989335-28989765,28989850-28989956,
           28990066-28990136
          Length = 414

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 629 LDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPC--IDKLQKSLVM 459
           L   M+G DH  S T  +  Q  RD+ + E   G+  + ++T+++    ID  Q SLV+
Sbjct: 296 LTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVI 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,814,280
Number of Sequences: 37544
Number of extensions: 369505
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)