Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e03r
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.1  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 798 LHIGVSGAI*RLQSDCFTRL*EYF*RSRWILRSRARHRS 682
           LH  VSGA+ RL  +    +  Y  R  W+   RAR  S
Sbjct: 702 LHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHRARSES 740


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 783 IRRYAMKQTELLVVRGNDIV 842
           + RYA K   +L +RG ++V
Sbjct: 721 VSRYAEKSRRMLYLRGREVV 740


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 371 LEDVIYKTLVYDKKEDEPLNEGDFC 297
           L++++  T  YDK+   P+ + DFC
Sbjct: 65  LDNLLLSTR-YDKRLLPPVQDADFC 88


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding
          protein ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 89 KLQKNMLKKCIIKI 48
          KL KNM K C+ KI
Sbjct: 31 KLAKNMRKSCLQKI 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,443
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)