Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e03f
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0437 - 22938263-22938273,22938345-22938444,22938727-229389...    31   1.3  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    30   2.4  
01_01_0621 + 4645583-4646902                                           30   2.4  
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955...    28   9.5  

>02_04_0437 -
           22938263-22938273,22938345-22938444,22938727-22938908,
           22938989-22939092,22939792-22939857,22940032-22940105,
           22940241-22940309,22940902-22941028,22941740-22942971,
           22943163-22943486,22943500-22943793
          Length = 860

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 481 IRSGGRDFIHRLCHGHGIF*LSG*PKSAIYQNRLRGLEQLALPKVRCFEKDSFNYI-NGD 657
           IR  G+  +HR+C G  IF LS   K  + +N L          +R + +DSF    NG 
Sbjct: 9   IRPIGKSAVHRICSGQVIFDLSSAVKELV-ENSLDAGATTVEVTLRSYGEDSFTVADNGT 67

Query: 658 G 660
           G
Sbjct: 68  G 68


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +2

Query: 392 YDNPNSWGKTYGEHKSHLEFSDT---QYRELFRYAQEVGILFTASAMDMV 532
           Y +PNS+G+     K H+++S T    +R    +A  VG   T    +++
Sbjct: 65  YCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTHPSEVI 114


>01_01_0621 + 4645583-4646902
          Length = 439

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 232 IIAANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFTLC 104
           IIA  SNV SY++  H ER+ KT+    +       G+   +C
Sbjct: 232 IIAPKSNVASYYNRRHTERNQKTSYSMTVQCVVDSTGAFTDVC 274


>07_03_0919 -
           22594980-22595111,22595398-22595427,22595522-22595587,
           22596021-22596107,22596868-22596921,22597696-22597762,
           22598099-22598215,22598536-22598637,22598784-22598902,
           22598966-22599049,22599220-22599354,22599470-22599505,
           22599581-22599700,22600557-22600645,22601507-22601596,
           22601629-22601802,22602135-22602235,22602323-22602363,
           22602872-22602883
          Length = 551

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 574 NRLRGLEQLALPKVRCFEKDSFNYINGDGRQNCRKDNLRYHFL 702
           N LR L + + P        +    NG GR +C K  LR H L
Sbjct: 145 NALRRLRRSSAPAPPADASAAAATANGSGRDSCSKMRLRLHLL 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,988,743
Number of Sequences: 37544
Number of extensions: 427395
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)