Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e03f
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    30   2.1  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    30   2.1  
AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode ast...    30   2.1  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z99281-45|CAC70123.2|  222|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>Z92784-2|CAB07193.3| 2029|Caenorhabditis elegans Hypothetical
           protein F31C3.3 protein.
          Length = 2029

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 112 TLCNKGLSTSRSRSNWINKVSCVHVQASVLLRARHT 5
           T+    L T RSR  W  + SC  +QA +L R R++
Sbjct: 41  TIDELSLETFRSREGWQFETSCSLIQAKLLRRGRNS 76


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 654 PVDIIKGIFFEAAYFRKSKLFESPEPILINGTF 556
           P+  +   F EA+ F  SK FE P P +  G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 654 PVDIIKGIFFEAAYFRKSKLFESPEPILINGTF 556
           P+  +   F EA+ F  SK FE P P +  G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>AF022979-10|AAB69905.3|  651|Caenorhabditis elegans Nematode
           astacin protease protein32 protein.
          Length = 651

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/77 (24%), Positives = 43/77 (55%)
 Frame = +1

Query: 232 SVFYNSGSGTESPR*HRDRKKINKSC*GSWS*LREVSKDMSRREIYKKISRKALRQPKLV 411
           +V  ++ + T SPR ++ + +  KS   +   LR V  +  ++++ KK+ +K ++ PK+ 
Sbjct: 82  TVTTSTSAPTTSPRVYKLKSEARKSLRKA---LRGVPPEKRKKQL-KKMGKKMMKIPKIT 137

Query: 412 GKDVRRTQKSFGILRYT 462
            K+  +  KS+  ++ T
Sbjct: 138 KKESNKLHKSYRKVKIT 154


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 328 LREVSKDMSRREIYKKISRKALRQPKLVGKDVRRTQK 438
           L E +K    RE++K   ++ L+ PKL  K++R  +K
Sbjct: 715 LDEATKVNGFREVFKPAYKQLLKTPKLFPKEIRNIEK 751


>Z99281-45|CAC70123.2|  222|Caenorhabditis elegans Hypothetical
           protein Y57G11C.34 protein.
          Length = 222

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 470 ELFRYAQEVGILFTASAMDM----VSFDFLVNLKVPFIKIGSGDSNNLLFLKYAASKKIP 637
           +L R+AQ+  I  T S  +M    V  D + N++     + S D  N LFLK   S   P
Sbjct: 4   KLARFAQKRWISSTTSTSNMYDPRVFRDPVTNVQELRKPLDSDDERNFLFLKAMKSDATP 63

Query: 638 LIISTGMVDK 667
           +     ++DK
Sbjct: 64  VFYRDHVIDK 73


>Z81136-5|CAB03460.2|  733|Caenorhabditis elegans Hypothetical
           protein W02B8.4 protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -1

Query: 327 LAPASLAAFINFFAISMSPW*FCPASAIIKHGLLPPILMSSVILTSTILS 178
           L+P  L  F+ F  I +SP    P   I+  G+L P ++S ++L   ILS
Sbjct: 612 LSPVVLTPFL-FAPIVLSPLALVPV--ILSPGILNPFILSPLVLCPFILS 658


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,009,191
Number of Sequences: 27780
Number of extensions: 377460
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)