Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e01r
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   2.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   5.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   5.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   9.3  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 149 TLHNNKEANNLHLKIYIPFKYKVNML 226
           T+HNN   NN +   Y    Y +N +
Sbjct: 89  TIHNNNNYNNNNYNNYKKLYYNINYI 114


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 128 SNNHFHVTLHNNKEANNLHLKIYIPFKYKVNML 226
           +NN+++   +NN   NN +   Y    Y +N +
Sbjct: 92  NNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYI 124


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 639 IIGEIDSALTINNKYINNLRFKKV 710
           II  + ++   +N Y NN  +KK+
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKL 326


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -2

Query: 457 ISPRYFCLNWNANCTILNWITKIRLRLNHFDSDIALYSSITTLKIVGFALIHP 299
           IS RY      A+C I    TK+ + +   D      ++ T L  +   +IHP
Sbjct: 193 ISKRYVLTA--AHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHP 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,227
Number of Sequences: 438
Number of extensions: 5354
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)