Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e01f
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.3  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 507 YRAWQVDLGR 536
           YR WQ+ LGR
Sbjct: 344 YRHWQIPLGR 353


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 196 PEFKPKTPFGQMPVLEIDGK 255
           P  KP+TPF    +L ++ K
Sbjct: 114 PNRKPRTPFTTQQLLALEKK 133


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 82  PNVKFYYFPVKAL 120
           P + FYY P+K L
Sbjct: 129 PIIAFYYKPIKTL 141


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 272  PPSAGTSVASTGSPGP 319
            PPS  +   STGS  P
Sbjct: 1113 PPSGSSGPGSTGSKSP 1128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,860
Number of Sequences: 336
Number of extensions: 2323
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)