Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19e01f
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)                 69   3e-12
SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)                 68   6e-12
SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)                 60   1e-09
SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)                 57   2e-08
SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.092
SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               31   0.86 
SB_50858| Best HMM Match : GST_N (HMM E-Value=0.00017)                 31   1.1  
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)                   29   2.6  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               29   3.5  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   4.6  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      29   4.6  
SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          28   6.0  
SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)                28   8.0  

>SB_19919| Best HMM Match : GST_N (HMM E-Value=4.7e-22)
          Length = 79

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
 Frame = +1

Query: 79  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK--TPFGQMPVLEIDG 252
           MP+ K YYF  +   E  RL+ A  G EFEDNR++   WP+ K +   PFGQ+P+L ID 
Sbjct: 1   MPSYKLYYFNARGRAEPARLVFAAAGIEFEDNRMAMGEWPKVKKELHAPFGQVPLLVIDD 60

Query: 253 K-QYAQSTAICRYLGRK 300
           K + AQS AI  ++ R+
Sbjct: 61  KIKLAQSLAIMTFIARE 77


>SB_11982| Best HMM Match : GST_N (HMM E-Value=7.9e-15)
          Length = 221

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
 Frame = +1

Query: 79  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEIDG 252
           MPN K  YF  +   E  RL  A GG  +ED R++ E W + K   KT  G +PVLE+DG
Sbjct: 1   MPNYKLIYFNTRGRAEPTRLCFAAGGIPYEDVRLTGEEWTKMKAENKTIMGYLPVLEVDG 60

Query: 253 KQYAQSTAICRYLGRKYGL 309
            QY +S AI R   +  GL
Sbjct: 61  IQYCESMAIFRLAAKLAGL 79


>SB_37695| Best HMM Match : GST_N (HMM E-Value=2.4e-24)
          Length = 102

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
 Frame = +1

Query: 79  MPNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISS-ENWPEFKPK--TPFGQMPVLEID 249
           MP+ K +YF  +   E  RL  A  G E+ED R    E W   KP+   PFGQ+P+L ID
Sbjct: 23  MPSYKLHYFNARGRAEPARLAFAAAGIEYEDKRFEGREEWLRVKPELDPPFGQVPLLVID 82

Query: 250 GK-QYAQSTAICRYLGRK 300
            K + AQS AI  Y+ R+
Sbjct: 83  DKIKLAQSMAILAYVARE 100


>SB_28555| Best HMM Match : GST_N (HMM E-Value=3.5e-18)
          Length = 195

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
 Frame = +1

Query: 82  PNVKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKP--KTPFGQMPVLEI-DG 252
           P  +  YF  +A  E  R+LL      F D R++  +W   K   + PFG++P+LEI DG
Sbjct: 3   PTYRVVYFDARARAECIRVLLHLADVPFTDERVAPPDWAAMKTSGRCPFGELPLLEISDG 62

Query: 253 KQYAQSTAICRYLGRKY 303
           ++ AQS AI R+L +++
Sbjct: 63  RKLAQSHAIFRFLAKEH 79


>SB_48679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 265 QSTAICRYLGRKYGLAGANDEEAFEID 345
           QS AI RY+GRKY + G  +EE   +D
Sbjct: 19  QSNAILRYIGRKYDMCGKTEEEKVIVD 45


>SB_54755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 100 YFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFK 207
           YF V+A GE  R+LL      F + R   E+WP  K
Sbjct: 95  YFDVRARGECIRVLLHLADVPFTEERHGLEDWPAVK 130


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = +2

Query: 23  QRGATCYRTIINYCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQN 202
           Q+G    R    YC  T   + LS+ +     S R   CC  T   SSK ++ +++ G  
Sbjct: 146 QQGVVSIRPA-RYCQHTSS-KVLSAYVQQGVVSIRPARCCQHT---SSKVLSAYVQQGVV 200

Query: 203 SNLRLRSVRCRCWKSTASSTLRA 271
           ++ ++ S   RC + T+S  L A
Sbjct: 201 TSSKVLSRPARCCQHTSSKVLSA 223


>SB_50858| Best HMM Match : GST_N (HMM E-Value=0.00017)
          Length = 235

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +1

Query: 82  PNVKFYYFP-VKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQ------MPVL 240
           P  + +Y+P +   GE  RLL       +ED  + ++   E   K  +G+       P +
Sbjct: 5   PEFRLFYWPGMSGRGEFVRLLFHETQTVYED--VFADKTFEEAAKMGYGRGKKHFAFPAI 62

Query: 241 EIDGKQYAQSTAICRYLGRK 300
           E      +Q+  ICRYLG+K
Sbjct: 63  EHGDISISQTPVICRYLGKK 82


>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
          Length = 759

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = +2

Query: 62  CTITRQCRTLSSTISPSRPSARARGCCWLTA-ARSSK-TIAFHLKTGQNSNLRLRSVRCR 235
           C  + +CR+   T   S       G C  +   RS + T    ++        + S+RCR
Sbjct: 508 CVTSIRCRSGEGTCVTSIRGRSGEGTCVTSIRCRSGEGTCVTRIRCRSGEGTCVTSIRCR 567

Query: 236 CWKSTASSTLRAPPSAGTSVAS 301
             + T  +++R     GT V S
Sbjct: 568 SGEGTCVTSIRCRSGEGTCVTS 589



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = +2

Query: 62  CTITRQCRTLSSTISPSRPSARARGCCWLTAAR---SSKTIAFHLKTGQNSNLRLRSVRC 232
           C  + +CR    T   S       G C +T+ R     +T    ++        + S+RC
Sbjct: 378 CVTSIRCRLGEETCVTSIRGRTGGGTC-VTSIRCRSGEETCVTSIRCRSGEETCVTSIRC 436

Query: 233 RCWKSTASSTLRAPPSAGTSVAS 301
           R  + T  +++R     GT V S
Sbjct: 437 RLGEETCVTSIRGRTGGGTCVTS 459


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 301 TCDRGTCRWRCSERTACRR 245
           TC+RG C+ RC+ R  C++
Sbjct: 386 TCERGKCQLRCNTRENCKQ 404


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 124 ESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTA 276
           E QRL+L    +E + NR ++  W E  P  P     +LEI  +Q  Q  A
Sbjct: 768 ERQRLILEQQERE-QQNRAAAAGWGEHAPVGPPPVKSLLEIQEEQARQQKA 817


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
 Frame = +2

Query: 38  CYRTIINYCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHLKTGQNSNLRL 217
           C R +     +  Q  ++ S  SPSRPS        LT + +  TI        +S  + 
Sbjct: 70  CVRNVSQVLRVYPQENSVHSKPSPSRPSLNIAPSSTLTPSTAGHTIDIRSTDHVHSRAQE 129

Query: 218 RSV-RCRCWKSTASST-----LRAPPSAGTSVAST 304
             +      K+TA+ST     +  PPS  T+  +T
Sbjct: 130 EQIPTLSTLKTTATSTSTTKYIPPPPSPPTTTTTT 164


>SB_25424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 88  VKFYYFPVKALGESQRLLLAYGGQEFEDNRISSENWPEFKPK 213
           V  +YF  +   E  RL++   G  + +   + E+WP  K K
Sbjct: 54  VTLHYFGSRGKAEGIRLMMEDNGVLYAETNYTKEDWPTVKQK 95


>SB_51229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 134 GCCWLTAARSSKTIAFHLKTGQNSNLRLRSVRCRCWKSTASSTLRAPPSAGTSVASTGSP 313
           GC       S +  +F ++  +  +LR +S+R    +++  ST   PPS  TS+ S G+ 
Sbjct: 107 GCIVYFVLMSRRKSSF-IRECRKQSLRSQSLRSLS-RASVRSTRGKPPSRSTSIRSQGNT 164

Query: 314 GPM 322
            P+
Sbjct: 165 EPL 167


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 484 ILTKNNGHIALGKLTWGDFVYAGMYDYLKAMLQKPDLEQKYPAFRKPIEAV 636
           IL K+    A G++ WGDFV   +  +   ML K D E +  A  K +E +
Sbjct: 340 ILPKDPYKRAHGRM-WGDFVSKKLVPHFYTMLLKQDKEDQEEAKTKYLEGL 389


>SB_42200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 8   FHFSFQRGATCYRTIINYCTITR 76
           +H    R  +CYR++INY  I +
Sbjct: 362 YHVFLSRSLSCYRSVINYVNILK 384


>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
          Length = 810

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +2

Query: 14  FSFQRGATCYRTIIN--YCTITRQCRTLSSTISPSRPSARARGCCWLTAARSSKTIAFHL 187
           +++ R  + ++T +   +CT+T    T   T+S  + + R+   C LTA  +  T++ H 
Sbjct: 575 YTYGRTLSSHKTTLRSLFCTLT--AGTTLCTLSSHKTTLRSL-VCTLTAGTTLCTLSSHK 631

Query: 188 KTGQNSNLRLRSVRCRCWKSTASSTLRA 271
            T ++    L +    C  S+  +TLR+
Sbjct: 632 TTLRSLVCTLTAGTTLCTLSSHKTTLRS 659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,997
Number of Sequences: 59808
Number of extensions: 302716
Number of successful extensions: 875
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)