Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d21r
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   1.1  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    28   1.9  
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    26   5.9  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 77   TYFGTCCVLYACKFSTNN 24
            TY+ +CC LY  K S+NN
Sbjct: 1996 TYYASCCFLYLFKSSSNN 2013


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 586 WKTLLLRQVPRQKKT-TKKRINLKTIKIVKKMMMPECPL 473
           W ++LL  VP++K + TKKR  L + K +K   +  CP+
Sbjct: 42  WNSILLA-VPKKKTSYTKKRSRLLSGKALKDKTVNRCPI 79


>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 794 SASDVVSTASAPENAVRLAPHLPAQDDAANQFSSAVGSGQMGPVMSQFG 648
           + + V+      ENAV  A  L  +D A N+ +    +  +GPV   FG
Sbjct: 212 TGATVLGRVEVGENAVVAAGALVTKDVAPNRLALGSPARDVGPVPQYFG 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,640
Number of Sequences: 5004
Number of extensions: 60448
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)