Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d21r
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784...    32   0.50 
07_03_0184 - 14825142-14825551,14826163-14826280                       30   2.0  
05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455           30   2.7  
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095...    30   2.7  
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930...    28   8.2  

>02_04_0053 -
           19276891-19277079,19277947-19278073,19278320-19278435,
           19279089-19279382
          Length = 241

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 719 DDAANQFSSAVGSGQMGPVMSQFGLPSEVSSAANTGNIEAVFK 591
           +D     ++A GSG +  ++S  G P+ V++A  TG   A+F+
Sbjct: 132 EDIQGSMAAAFGSGALFSIVSGMGTPNPVANAITTGAAFAIFQ 174


>07_03_0184 - 14825142-14825551,14826163-14826280
          Length = 175

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 619 IRETLKPSSRHWKTLLLRQVPRQK 548
           +++T+ PS+ HWKTL+   +P +K
Sbjct: 132 VKKTMFPSNCHWKTLVKSSIPAKK 155


>05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455
          Length = 559

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 761 PENAVRLAP-HLPAQDDAANQFSSAVGSGQMGPVMSQFGLPSEVSSAANTGNIEAVFKAL 585
           PE A RL    L A + AA        +G       Q G+P+  ++AA+ GNIE  F+ L
Sbjct: 408 PEEAKRLKDIMLAAAEVAAQHLRDEPATGD------QTGVPAAAAAAASAGNIERAFRLL 461

Query: 584 E 582
           +
Sbjct: 462 D 462


>04_03_0827 -
           20108937-20109046,20109146-20109234,20109400-20109548,
           20109801-20109942,20110530-20110645,20111141-20111458
          Length = 307

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 707 NQFSSAVGSGQMGPVMSQFGLPSEVSSAANTGNIEAVFK 591
           +  ++A GSG +  ++S  G P+ V++A  TG   AVF+
Sbjct: 149 DSMAAAFGSGALFSIVSGMGSPNPVANAITTGVAFAVFQ 187


>11_04_0162 +
           14291835-14292281,14292330-14292697,14292836-14293050,
           14293090-14294129
          Length = 689

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 616 RETLKPSSRHWKTLLLRQVPRQKKTTKKRINLKTIKIVKKMM--MPECPLIN 467
           +ET+ P +R+WKT +   VP +K     +  L +    KK+    P+ P ++
Sbjct: 628 KETMMPRNRYWKTPVKSPVPAKKLEQPAQKKLSSAPKPKKVWKEKPKTPALS 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,200,473
Number of Sequences: 37544
Number of extensions: 400998
Number of successful extensions: 1207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)