Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d21r
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...    44   1e-04
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    30   2.4  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    29   3.2  
Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical...    28   7.3  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
 Frame = -1

Query: 821 VNVDLGSVLSASDVVSTASAPENAVRLAPHLPAQDDAANQFSS----------------A 690
           V V L + LS   V   A    +A  LAPHLP  DD A + S                 A
Sbjct: 244 VAVSLATALSNETVAEVAR--NHAEELAPHLPTSDDPARELSETVRTPQFRQAADTLGHA 301

Query: 689 VGSGQMGPVMSQFGLPSEVSSAANTGNI 606
           + +GQ+GPV++QFG+      +AN G+I
Sbjct: 302 LQTGQLGPVVAQFGMDEATVGSANQGDI 329


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -1

Query: 776 STASAPENAVRLAPHLPAQDDAANQFSSAVGSGQMGPVMSQFGLPSEVSSAANTGNIEA 600
           ST+ AP+++       P   D +NQF+S      MGP + Q  LP   +SA N  +++A
Sbjct: 23  STSEAPQDSQAQQTMPPPSSDWSNQFNSPEAE-DMGPFVEQL-LPFVRASAYNWFHLQA 79


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 725 AQDDAANQFSSAVGSGQMGPVMSQFGLPSEVSSAANTGNIEAVFKALE 582
           AQ    N   S +G+  + P    FGLPS  S++ ++ N  A F  +E
Sbjct: 500 AQQPPPNPLGSILGNTSLTPQTLNFGLPSLSSASFSSLNAHAPFTPVE 547


>Z81455-3|CAB03808.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 103 PNIDSYYSTCVIGNSDQEN*DSHYILQFSSQYN 201
           P  +   S  ++GNS  EN D H   QF S Y+
Sbjct: 420 PKANGTLSVMLVGNSYVENLDGHIRAQFRSNYS 452


>AL032623-19|CAA21519.2|  890|Caenorhabditis elegans Hypothetical
           protein B0399.2 protein.
          Length = 890

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 103 PNIDSYYSTCVIGNSDQEN*DSHYILQFSSQYN 201
           P  +   S  ++GNS  EN D H   QF S Y+
Sbjct: 420 PKANGTLSVMLVGNSYVENLDGHIRAQFRSNYS 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,790,544
Number of Sequences: 27780
Number of extensions: 357984
Number of successful extensions: 1036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)