Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d16r
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    82   7e-18
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 81.8 bits (193), Expect = 7e-18
 Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 10/240 (4%)
 Frame = -3

Query: 705 ARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHCWRTRNSQGRXXX 526
           +RIVGG+  G+   P +A +  T   G   +CGA+++S    +TAAHC    N+      
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGM--ICGATIISKRYVLTAAHCIIDENTTKLAIV 216

Query: 525 XXXXXXXXXXXXFRI---NTNNVQMHGSYNM----DTIHNDVAMIIHGR-VGYTNVIQPI 370
                             + N V +H  Y++    D   ND+A++   + + + + + P 
Sbjct: 217 VGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPA 276

Query: 369 FLPPSHLLNNQFVGTWAWAAGYGLTRDGGGSNTQKHQVALRVITNAVCSRTFNGIIASTL 190
            LP  H L++ F G+     G+G T   G  +    +  L ++T   C + +  I+ + +
Sbjct: 277 CLPFQHFLDS-FAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQVECYKYYGNIMVNAM 335

Query: 189 CVDTQGGRSTCRGDSGGPLAFTYAGRRTL--IGITSFGAAQCQQGHPAGFARVTSFASWI 16
           C   + G+  C+ DSGGP+ +     + L  IGI S+G A+C + +P G  +V S+  WI
Sbjct: 336 CAYAK-GKDACQMDSGGPVLWQNPRTKRLVNIGIISWG-AECGK-YPNGNTKVGSYIDWI 392


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 379 PADLPAPLTSPQQPVRG 329
           P   P+P  SPQ P RG
Sbjct: 21  PGPQPSPHQSPQAPQRG 37


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 141 GPLAFTYAGRRTLIGITSFGAAQC 70
           G L  T+AG   L+G   FG   C
Sbjct: 75  GCLVMTFAGVNDLLGYWVFGPRFC 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,579
Number of Sequences: 438
Number of extensions: 4951
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)