Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d16f
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    28   1.6  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    27   2.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   2.9  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   3.8  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   3.8  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.8  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   6.6  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.8  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 580 AQVPTNWLLRRCEGGRKIGWITFVYPTRPWIIIATSL*IV 461
           A  PT  +++  +G  ++  I FVYPTRP +++  +  +V
Sbjct: 405 AFTPTGDVVKDIKGEIELKNIRFVYPTRPEVLVLDNFSLV 444


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 456 MDTIHNDVAMIIHGRVGYTNVIQPIFLPPSHL 551
           +D ++ND+ ++ HG +  T  I  I++ P ++
Sbjct: 452 VDALNNDMVILAHGEIEVTVPISTIYVAPVNI 483


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 117 TNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGR-TSMCG 293
           +NY+EV    M+  ++ A+E +D     ++  SV  LGT     A++    +GR  S+CG
Sbjct: 316 SNYNEV----MSAMIRPAKEQSDLTDGSLISLSVKELGTTELYPAVLKHSPNGRFVSVCG 371


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 105 VPIETNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDG 275
           +PI  + H+  G  +A    + E GAD     +   S++GL + P   A V+   DG
Sbjct: 772 LPIHVHTHDSAGTAVASMAAALEAGADV--VDVATDSMSGLTSQPSFGA-VLASVDG 825


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 383 ETQLKRASLRVPGPPAVSRGHGAGVAQQRGSAHGGATVGQSNHHSGK 243
           E+   R S R   P   S  +G      RG  +GG    Q+N+  G+
Sbjct: 51  ESVSSRGSSRSQTPSEFSSNYGGRREYNRGGHYGGGEGRQNNYRGGR 97


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 3   LGSRVSRSLLLCDPRMR 53
           L +R+ RS +LCDPR+R
Sbjct: 174 LNTRLMRSYVLCDPRVR 190


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -1

Query: 437 LNIVSVNSESTSEELSGAETQLKRASLRVPGPPAVSRGHGAGVAQQRGSAH 285
           L  VS N E  S E        +    +V GPPA+S   G  + + + +AH
Sbjct: 142 LEYVSFNDELKSLETGQPLYCFQDFQKKVHGPPALSEKPGKCILKDKTNAH 192


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 201 IVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHT 314
           ++ G V G+G      AM+  +TD   S+ G+++ + T
Sbjct: 424 LIAGGVLGVGDPQLWLAMINYITDSYPSVAGSAIAAFT 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,020
Number of Sequences: 5004
Number of extensions: 47907
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)