Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19d16f
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 3.0
06_03_0887 + 25688726-25689616,25689759-25690406 29 3.0
03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041 29 4.0
01_04_0091 - 15948192-15948905 29 4.0
07_03_1084 - 23849582-23849965 29 5.2
07_01_0761 + 5849466-5850677 29 5.2
05_02_0145 + 7067521-7068993 29 5.2
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 28 6.9
07_03_1344 - 25912639-25914060 28 6.9
05_01_0141 - 937428-937717,938483-938705 28 6.9
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 28 6.9
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 28 6.9
12_02_0946 + 24675334-24676338,24676537-24676757,24678253-246783... 28 9.2
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 28 9.2
03_05_0025 + 19938138-19938306,19938899-19939505,19939613-199397... 28 9.2
01_06_0732 + 31561149-31561770,31561908-31561999 28 9.2
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = -1
Query: 419 NSESTSEELSGAETQLKRASLRVPG---PPAVSRGHGAGVAQQRGSAHGGATVGQSNHH 252
+ E EEL+ + + R P PP+ + G G S+ GG G NHH
Sbjct: 83 DDEDADEELAASAPRYPPVQRRSPSTAPPPSPPQPSGGGGHHHSSSSSGGGGGGYHNHH 141
>06_03_0887 + 25688726-25689616,25689759-25690406
Length = 512
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 123 YHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMV 257
+ E+I P AM+ +AE DF+ A V S +G P+L +V
Sbjct: 315 FAELIRNPAAMKKATAEVRRDFEAAGAVSESALAVGELPYLRLVV 359
>03_06_0112 - 31739783-31740482,31740648-31740777,31740906-31741041
Length = 321
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 218 HTTSYDPGAVEVSALLSALELHRHRDPNHLMIVGLYGYEGMGSSRQRK 75
H + G ++ S++L ALEL + NH+ + GL GMG + +
Sbjct: 238 HGVPLNEGGMQCSSVLPALELDENFHFNHVKLDGLECLFGMGDHQNMR 285
>01_04_0091 - 15948192-15948905
Length = 237
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 745 GRCCAPPWVSTQRVDAMIPLKVREQTAL 662
G A PW +T +D +PLKV+ +A+
Sbjct: 31 GAWSARPWTNTSDIDMPLPLKVKRYSAM 58
>07_03_1084 - 23849582-23849965
Length = 127
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/71 (33%), Positives = 31/71 (43%)
Frame = -1
Query: 329 RGHGAGVAQQRGSAHGGATVGQSNHHSGKMWMSA*PRHTTSYDPGAVEVSALLSALELHR 150
RG GV+ Q GS+HGG G S H W A PG+V+ + A E R
Sbjct: 57 RGGYRGVSSQDGSSHGGG--GGSRRHLIDYWELA-GSAAEDARPGSVQET---GAAEDER 110
Query: 149 HRDPNHLMIVG 117
R P ++ G
Sbjct: 111 SRPPAAVVAAG 121
>07_01_0761 + 5849466-5850677
Length = 403
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 540 PSHLLNNQFVGTWAWAAGYGLTRDGGG 620
P +L++ + W WA G G TR GGG
Sbjct: 340 PVVVLDDGRIVFWVWAGGSGGTRHGGG 366
>05_02_0145 + 7067521-7068993
Length = 490
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 470 QRRGYDYPRTGRIHKCDPADLPAPLTSPQQPVRGYLGLGCWLWINQGW 613
+ G D+ G I + L P +PQ + G+ +GC+L + GW
Sbjct: 342 EEEGMDFLPEGFIERTRGVGLLVPSWAPQTSILGHASIGCFL-THCGW 388
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 156 ELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSH 311
EL +++ D+DGAR + + PH + + D ++ + S +SH
Sbjct: 160 ELVGSKKVGDYDGARCCACAKPEIAATPHKTKDICGMDDAKSDVVDRSSVSH 211
>07_03_1344 - 25912639-25914060
Length = 473
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 177 GADFDGARIVGGSVAGLGTHPHLAAMVITLT 269
G + A IVGG +AGL HLA+M + T
Sbjct: 43 GGGGNKAVIVGGGLAGLAAANHLASMSVPFT 73
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 347 GPPAVSRGHGAGVAQQRGSAHGGATVGQSNHHSG 246
G +S GHG G G HGG G HH G
Sbjct: 97 GAHKLSHGHGHG-GYGYGGHHGGLFGGHHGHHGG 129
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 633 SGCYYHLHPWLIHNQQPRPRYP 568
+G YYH HP + QP P YP
Sbjct: 301 AGGYYHPHPNDVPTYQPPPSYP 322
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = +2
Query: 308 PHPLRDRGSLLEDQELSRTHASIGFRHHSVLHWWIQN*H*QCSNARQLQHGHYSQRRGYD 487
P PLRD + L R H +H S + W R H Y +
Sbjct: 555 PPPLRDTSAELHWCRRGRVHNDWAQKHKSFVDMWEAKEQDVVMEDRPYDHSSYMDYLRW- 613
Query: 488 YPRTGRIHKCDP 523
Y R+ RI C P
Sbjct: 614 YRRSTRIRLCTP 625
>12_02_0946 +
24675334-24676338,24676537-24676757,24678253-24678307,
24678446-24678571
Length = 468
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -1
Query: 368 RASLRVPGPPAVSRGH 321
RASLRV PPAVSR H
Sbjct: 61 RASLRVADPPAVSRLH 76
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 347 GPPAVSRGHGAGVAQQRGSAHGGATVGQSNHH 252
GP A++ GHG G RG HGG HH
Sbjct: 40 GPIAIAAGHGRG---HRGGGHGGP--ASPRHH 66
>03_05_0025 +
19938138-19938306,19938899-19939505,19939613-19939723,
19941891-19941972,19942033-19942080
Length = 338
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 165 SAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCG 293
+ ++G D DG R G VAGL T P + ++ D CG
Sbjct: 49 NGDDGDDNDGGRHTYGKVAGLRTIPSVVKSIV--RDNIRPRCG 89
>01_06_0732 + 31561149-31561770,31561908-31561999
Length = 237
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = -1
Query: 431 IVSVNSESTSEELSGAETQLKRASLRVPGPPAVSRGHGAGVAQQRGSAHGGATVGQSNHH 252
+ +++S S+S GA T + V G PA +G G G + +A GGA G+ H+
Sbjct: 74 VAALSSSSSSSPELGART----TAPVVAGHPAGRKGGGGGGGGRGAAARGGAAGGR--HY 127
Query: 251 SG 246
G
Sbjct: 128 RG 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,793,833
Number of Sequences: 37544
Number of extensions: 412564
Number of successful extensions: 1663
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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