Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19d16f
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 40 0.002
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 39 0.003
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 37 0.013
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb... 33 0.22
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 32 0.50
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 29 3.5
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 29 4.7
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 29 4.7
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 28 8.2
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 28 8.2
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 39.9 bits (89), Expect = 0.002
Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 5/185 (2%)
Frame = +3
Query: 156 ELKSAEEGADFDGA--RIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTA 329
+ +SA+E AD+ R++GGS + + P ++ L R CG SL+ +TA
Sbjct: 41 QTRSAQEPADYVTLDHRLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTA 97
Query: 330 AHCWRTRNSQGRXXXXXXXXXXXXXXXXRINTNNVQMHGSYNM--DTIHNDVAMIIHGRV 503
AHC+ R+ V +H YN+ + ++ M IH V
Sbjct: 98 AHCFAKDRRPTSYSVRVGGHRSGSGSPHRVTA--VSIHPWYNIGFPSSYDFAIMRIHPPV 155
Query: 504 GYTNVIQPIFLPPSHLLNNQFVGTWAWAAGYGLTRDGGG-SNTQKHQVALRVITNAVCSR 680
+ +PI LP + N+ G+G T +G S ++ + +++ CS
Sbjct: 156 NTSTTARPICLPSLPAVENRL----CVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSS 211
Query: 681 TFNGI 695
N I
Sbjct: 212 LPNYI 216
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +3
Query: 165 SAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHCW 341
+A + A AR+VGG G P AA+ T + CGAS+L T +TAAHC+
Sbjct: 15 NARDAAKSRIARVVGGFETVPGAFPWTAALRNKAT--KAHHCGASILDKTHLITAAHCF 71
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 37.1 bits (82), Expect = 0.013
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 9/172 (5%)
Frame = +3
Query: 198 RIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHCWRTRNSQGRXXXX 377
RI+GG+ G + +A +V +G+ +CGA+++ VTAAHC Q +
Sbjct: 37 RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC----ALQLQTRSF 91
Query: 378 XXXXXXXXXXXXRINTNNVQMHGSYNMDTIHNDVAMIIHGRVGYTNVIQPIFL--PPSHL 551
+ +H YN T ND+A++ I+P+ L S L
Sbjct: 92 VYVREPKNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151
Query: 552 LNNQFVGTWAWAAGYGLT--RDGGGS----NTQKHQ-VALRVITNAVCSRTF 686
L G GYGLT D G N+Q Q ++ +I++ C +T+
Sbjct: 152 LKQYKNGV---VIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTW 200
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 201 IVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSHTRSVTAAHC 338
I+ G A LA+++ DG T++CG L++ + +T+AHC
Sbjct: 17 IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62
>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
protein D2023.2 protein.
Length = 1175
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 105 VPIETNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTS 284
+PI + H+ G +A L+ A+ GAD A + S++G+ + P + A+V +L G
Sbjct: 762 IPIHVHTHDTSGAGVAAMLECAKAGADVVDAAV--DSMSGMTSQPSMGAIVASL-QGTKH 818
Query: 285 MCGASL 302
G SL
Sbjct: 819 DTGLSL 824
>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
carboxylase protein.
Length = 1175
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 105 VPIETNYHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTS 284
+PI + H+ G +A L+ A+ GAD A + S++G+ + P + A+V +L G
Sbjct: 762 IPIHVHTHDTSGAGVAAMLECAKAGADVVDAAV--DSMSGMTSQPSMGAIVASL-QGTKH 818
Query: 285 MCGASL 302
G SL
Sbjct: 819 DTGLSL 824
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 479 GYDYPRTGRIHKCDPADLPAPLTSP 553
GY+Y ++ R CDPADL +P++SP
Sbjct: 430 GYNYAKS-RKRPCDPADLHSPISSP 453
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = -1
Query: 419 NSESTSEELSGAETQLKRASLRVPGP-PAVSRGHGAGVAQQRGSAHGGATVGQSNHHSGK 243
N + + E+ + Q +S P PA G GAG ++ +T S+HH
Sbjct: 11 NYKQSQEKKLPTDIQSTSSSSAAPASAPAPRAGAGAGATSSSAASSSTSTPSSSSHHK-- 68
Query: 242 MWMSA*PRHTTSYDPGA 192
S+ P H S P A
Sbjct: 69 --KSSPPHHQKSAAPSA 83
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 SNARQLQHGHYSQRRGYDYPRTGRIHKCDP--ADLPAPLTSPQQPVRG 571
S ARQLQH S RG R+ H+ DP A LP+ T + V G
Sbjct: 773 SIARQLQHFSLSPCRGGRTHRSVSTHRIDPPNASLPSTPTMSHKKVIG 820
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 SNARQLQHGHYSQRRGYDYPRTGRIHKCDP--ADLPAPLTSPQQPVRG 571
S ARQLQH S RG R+ H+ DP A LP+ T + V G
Sbjct: 773 SIARQLQHFSLSPCRGGRTHRSVSTHRIDPPNASLPSTPTMSHKKVIG 820
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 SNARQLQHGHYSQRRGYDYPRTGRIHKCDP--ADLPAPLTSPQQPVRG 571
S ARQLQH S RG R+ H+ DP A LP+ T + V G
Sbjct: 289 SIARQLQHFSLSPCRGGRTHRSVSTHRIDPPNASLPSTPTMSHKKVIG 336
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 SNARQLQHGHYSQRRGYDYPRTGRIHKCDP--ADLPAPLTSPQQPVRG 571
S ARQLQH S RG R+ H+ DP A LP+ T + V G
Sbjct: 289 SIARQLQHFSLSPCRGGRTHRSVSTHRIDPPNASLPSTPTMSHKKVIG 336
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 434 SNARQLQHGHYSQRRGYDYPRTGRIHKCDP--ADLPAPLTSPQQPVRG 571
S ARQLQH S RG R+ H+ DP A LP+ T + V G
Sbjct: 773 SIARQLQHFSLSPCRGGRTHRSVSTHRIDPPNASLPSTPTMSHKKVIG 820
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 479 GYDYPRTGRIHKCDPADLPAPLTSPQQPVRGYLGLGCWLWI-NQG 610
G+++ RTGR PAP T+ Q PV G L + NQG
Sbjct: 279 GFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQG 323
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 479 GYDYPRTGRIHKCDPADLPAPLTSPQQPVRGYLGLGCWLWI-NQG 610
G+++ RTGR PAP T+ Q PV G L + NQG
Sbjct: 279 GFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQG 323
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 479 GYDYPRTGRIHKCDPADLPAPLTSPQQPVRGYLGLGCWLWI-NQG 610
G+++ RTGR PAP T+ Q PV G L + NQG
Sbjct: 279 GFNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQG 323
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 455 HGHYSQRRGYDYPRTG---RIHKCDPADLPAPLTSPQQPVRGY 574
HGH G+ + G H+ P+ PAP++SP PV+ Y
Sbjct: 310 HGHSHDDGGHGHSHDGGHGHSHEHSPSPAPAPVSSP-TPVQQY 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,675
Number of Sequences: 27780
Number of extensions: 286865
Number of successful extensions: 903
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -