Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d12r
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   1.7  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    23   8.8  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    23   8.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    23   8.8  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 235 VQCRRLKTKLLHRRDLKNLYRN 170
           VQC  +KT  LHR+DL+N   N
Sbjct: 236 VQCTLIKT--LHRKDLRNAVAN 255


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 283 YCTIAHT*LKYFNIIKVQCRRLK 215
           Y  ++H  L   NIIK Q +RLK
Sbjct: 474 YVYLSHNLLTVCNIIKAQFQRLK 496


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 325 NYCQNYDKNYETVSYCT 275
           NYCQ    +Y   +YC+
Sbjct: 117 NYCQGNSSDYTNPTYCS 133


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 147 LSRFAWWKFRYRFFRSLRCNNFVF 218
           +S   W   RYRFF  +   +FVF
Sbjct: 321 ISANGWTISRYRFFAYVMIGSFVF 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,690
Number of Sequences: 5004
Number of extensions: 17971
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)