Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d12r
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636...    28   2.0  
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151...    27   2.6  
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962...    26   6.1  

>09_04_0281 -
           16360082-16361059,16361608-16361688,16363287-16363650,
           16363675-16364348
          Length = 698

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 223 RLKTKLLHRRDLKNLYRNFHHAKRLKQI 140
           +L   L H   LK LYR+  H K LKQ+
Sbjct: 586 QLHWDLKHEGILKQLYRDLKHEKMLKQV 613


>04_04_1049 +
           30414545-30414596,30414732-30414853,30415121-30415198,
           30415329-30415459,30415644-30417552,30417797-30417836,
           30418194-30418259,30418583-30418734
          Length = 849

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 8   YKAKISLPTHHFHCHHRFG 64
           +K K+    HH H HH FG
Sbjct: 548 FKEKLGTVFHHLHHHHHFG 566


>11_03_0073 -
           9621199-9621312,9621401-9621476,9621553-9621619,
           9621655-9621751,9621898-9621996,9622348-9622358,
           9622716-9622784,9622871-9623195,9623287-9623457,
           9623538-9623713,9624173-9624414,9624481-9624542,
           9625305-9625340,9626103-9626262,9626372-9626606,
           9626694-9626949,9627062-9627176,9628388-9628450,
           9628592-9629325
          Length = 1035

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 8   YKAKISLPTHHFHCHHRFGAF-LTPMSF 88
           Y+  +  PT   HC H+FGA   TP  F
Sbjct: 850 YENIVEQPTDTRHCDHKFGASQCTPTKF 877


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,818,672
Number of Sequences: 37544
Number of extensions: 97079
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)