Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d12f
         (373 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    31   0.004
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   5.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          20   9.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   9.4  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           20   9.4  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 31.1 bits (67), Expect = 0.004
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 208 TSLFNRMNDGENSSVSKTLQNGDDNESDEWE 300
           TS  +  N+   +SV++  +NGDD+E  EW+
Sbjct: 91  TSQVDDQNESLEASVNENSKNGDDDEGHEWQ 121


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 223 RMNDGENSSVSKTLQNGDDNESDEWE 300
           + N+   ++V K L +  DN+ D W+
Sbjct: 72  KCNEKVKANVRKVLHHLIDNKPDMWK 97


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 137 LKNLYRNFHHAKRLKQ 184
           L  L R FHH K L +
Sbjct: 100 LVELEREFHHGKYLSR 115


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 226 MNDGENSSVSKTLQNGDDNESDEW 297
           +N+G+  SV  T+  GD   +  W
Sbjct: 615 INEGDGVSVQCTVSKGDYPLNISW 638


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 137 LKNLYRNFHHAKRLKQ 184
           L  L R FHH K L +
Sbjct: 91  LVELEREFHHGKYLSR 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,786
Number of Sequences: 336
Number of extensions: 1413
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)