Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d12f
         (373 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0055 + 25235844-25235872,25237026-25237932                       28   2.0  
09_04_0281 - 16360082-16361059,16361608-16361688,16363287-163636...    28   2.7  
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151...    27   3.6  
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760...    26   8.2  
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962...    26   8.2  
06_03_0371 - 19990168-19990584                                         26   8.2  
05_01_0183 - 1289608-1289643,1289965-1290026,1290113-1290162,129...    26   8.2  

>05_06_0055 + 25235844-25235872,25237026-25237932
          Length = 311

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 346 SLKNKLGLLYKAKI--SLPTHHFHCHH 272
           SL N LGLL  A +  +L  HH H HH
Sbjct: 188 SLSNSLGLLNAATMPATLAAHHHHHHH 214


>09_04_0281 -
           16360082-16361059,16361608-16361688,16363287-16363650,
           16363675-16364348
          Length = 698

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 RLKTKLLHRRDLKNLYRNFHHAKRLKQI 187
           +L   L H   LK LYR+  H K LKQ+
Sbjct: 586 QLHWDLKHEGILKQLYRDLKHEKMLKQV 613


>04_04_1049 +
           30414545-30414596,30414732-30414853,30415121-30415198,
           30415329-30415459,30415644-30417552,30417797-30417836,
           30418194-30418259,30418583-30418734
          Length = 849

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 319 YKAKISLPTHHFHCHHRFG 263
           +K K+    HH H HH FG
Sbjct: 548 FKEKLGTVFHHLHHHHHFG 566


>12_01_0824 +
           7601811-7602598,7603690-7605730,7605762-7605767,
           7606142-7606291
          Length = 994

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 364 YKNNIYSLKNKLGLLYKAKISLPTHHFH 281
           + NNI S+  K G LYKA   L T   H
Sbjct: 85  FSNNITSVDAKTGFLYKASQFLKTCRAH 112


>11_03_0073 -
           9621199-9621312,9621401-9621476,9621553-9621619,
           9621655-9621751,9621898-9621996,9622348-9622358,
           9622716-9622784,9622871-9623195,9623287-9623457,
           9623538-9623713,9624173-9624414,9624481-9624542,
           9625305-9625340,9626103-9626262,9626372-9626606,
           9626694-9626949,9627062-9627176,9628388-9628450,
           9628592-9629325
          Length = 1035

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 319 YKAKISLPTHHFHCHHRFGAF-LTPMSF 239
           Y+  +  PT   HC H+FGA   TP  F
Sbjct: 850 YENIVEQPTDTRHCDHKFGASQCTPTKF 877


>06_03_0371 - 19990168-19990584
          Length = 138

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 343 LKNKLGLLYKAKISLPTHHFHCHHR 269
           +K K+    +A  +LP HH H HH+
Sbjct: 109 IKEKIDFYLQAP-ALPRHHLHLHHQ 132


>05_01_0183 -
           1289608-1289643,1289965-1290026,1290113-1290162,
           1290260-1290357,1290547-1290927,1291191-1291697,
           1291922-1291996,1292095-1292286,1292599-1292658
          Length = 486

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 208 TSLFNRMNDGENSSVSKTLQNGDDNESDEWED*F*PCITI 327
           T     M  GENS  S   ++ D  E D W+    PC T+
Sbjct: 30  TDAVKSMLSGENSEGSDGSKSSDTVEWDPWDPPHPPCPTL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,447,053
Number of Sequences: 37544
Number of extensions: 110721
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)