Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19d12f
(373 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr... 28 2.4
U41534-11|AAM22028.1| 686|Caenorhabditis elegans Hypothetical p... 27 5.7
U41534-10|AAK68177.1| 687|Caenorhabditis elegans Hypothetical p... 27 5.7
U41534-9|AAM22029.1| 690|Caenorhabditis elegans Hypothetical pr... 27 5.7
AL117204-27|CAB55133.2| 241|Caenorhabditis elegans Hypothetical... 27 5.7
Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 26 7.5
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical pr... 26 9.9
AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and trans... 26 9.9
>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
protein ZK897.1 protein.
Length = 1396
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 192 YVICLSRFAWWKFRYRFFRSLRCNNFVF 109
Y C+ R AW K++ RFF ++ + + F
Sbjct: 630 YCYCIGRNAWKKWKKRFFCLVQVSQYAF 657
>U41534-11|AAM22028.1| 686|Caenorhabditis elegans Hypothetical
protein C16A3.1b protein.
Length = 686
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 223 RMNDGENSSVSKTLQNGDDNESDEWED 303
R ND +++ L+ D DEWED
Sbjct: 636 RFNDAAQPGIAEYLKKTPDTTIDEWED 662
>U41534-10|AAK68177.1| 687|Caenorhabditis elegans Hypothetical
protein C16A3.1a protein.
Length = 687
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 223 RMNDGENSSVSKTLQNGDDNESDEWED 303
R ND +++ L+ D DEWED
Sbjct: 637 RFNDAAQPGIAEYLKKTPDTTIDEWED 663
>U41534-9|AAM22029.1| 690|Caenorhabditis elegans Hypothetical
protein C16A3.1c protein.
Length = 690
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 223 RMNDGENSSVSKTLQNGDDNESDEWED 303
R ND +++ L+ D DEWED
Sbjct: 640 RFNDAAQPGIAEYLKKTPDTTIDEWED 666
>AL117204-27|CAB55133.2| 241|Caenorhabditis elegans Hypothetical
protein Y116A8C.43 protein.
Length = 241
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 180 LSRFAWWKFRYRFFRSLRCNNFVF 109
LS + W+ FF +CNNFVF
Sbjct: 71 LSEYFTWEESGTFFPFQKCNNFVF 94
>Z81526-1|CAB04264.1| 816|Caenorhabditis elegans Hypothetical
protein F33H2.2 protein.
Length = 816
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 205 LTSLFNRMNDGENSSVSKTLQNGDDNESDE 294
++SL +D E + ++KTL GDD+E+D+
Sbjct: 327 MSSLITSTSD-ELNELTKTLLRGDDDETDD 355
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical protein
K09C8.5 protein.
Length = 1328
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 190 INKKLLTSLFNRMNDGENSSVSKTLQNGDDNESDEWED 303
+NK+L LFNR ++ + +Q G D+ W +
Sbjct: 1069 LNKELTEKLFNRFHEVALDLAALNIQRGRDHGLPSWTE 1106
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical protein
K09C8.5 protein.
Length = 1328
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 190 INKKLLTSLFNRMNDGENSSVSKTLQNGDDNESDEWED 303
+NK+L LFNR ++ + +Q G D+ W +
Sbjct: 1069 LNKELTEKLFNRFHEVALDLAALNIQRGRDHGLPSWTE 1106
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -1
Query: 301 LPTHHFHCHHRFGAFLTPMSFLRH 230
+P HH H H + PM F H
Sbjct: 245 MPHHHHHHHPHASSHYNPMGFQNH 268
>Z47811-3|CAA87787.2| 723|Caenorhabditis elegans Hypothetical
protein K02C4.4 protein.
Length = 723
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 44 YCTIAHT*LKYFNIIKVQCRRLKTKLLHRRDLKNLYRNFHHAKRLKQ 184
Y I+H KY Q R +LLHR+D +LY +F KR+++
Sbjct: 120 YPKISHEGAKYVVDYDTQTR---LELLHRKDEDDLYESFQD-KRVRE 162
>AF489839-1|AAN09795.1| 723|Caenorhabditis elegans lim and
transglutaminase domainprotein protein.
Length = 723
Score = 25.8 bits (54), Expect = 9.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 44 YCTIAHT*LKYFNIIKVQCRRLKTKLLHRRDLKNLYRNFHHAKRLKQ 184
Y I+H KY Q R +LLHR+D +LY +F KR+++
Sbjct: 120 YPKISHEGAKYVVDYDTQTR---LELLHRKDEDDLYESFQD-KRVRE 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,184,186
Number of Sequences: 27780
Number of extensions: 119495
Number of successful extensions: 392
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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