Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d11r
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    27   1.0  
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    27   1.8  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   2.3  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   4.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   9.4  

>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 348 LVDTATTAVNTNKRANFILQNRSELKFRLKSQL 446
           L  TA  A   +KR   +L    +  FRLKSQL
Sbjct: 38  LEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQL 70


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 252 VTEKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNT 380
           + E  + +  F   V  +K  AL +EL    SL+  ATT++N+
Sbjct: 120 IAESFQRAAGFT--VDCMKENALAIELSDRESLLRAATTSLNS 160


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 252  VTEKLRNSLSFEAIVPMLKTRALLVELGSATSLVDTATTAVNTNK 386
            V +KL N +SF+      ++++  VEL + TS  DT T ++ T K
Sbjct: 951  VKDKL-NKMSFKKKKNEQRSQSFQVELSNLTSEYDTTTESIATLK 994


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -3

Query: 209 YSTQQYAHQGHPSPASGSVTVRDCPRCGG--RCRLEHRHSSVHKLTAQR 69
           YS+  Y+   HP P  G  ++ D P+        L    S+VH +   R
Sbjct: 680 YSSSPYSVFSHPPPYMGRQSLNDSPQTSDFKASNLNDSSSNVHSIFQTR 728


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 349  NEVADPSSTNRALVLSIG 296
            N+ +DP+STN A+ L IG
Sbjct: 1078 NQFSDPTSTNAAVGLIIG 1095


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,852
Number of Sequences: 5004
Number of extensions: 30097
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)