Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d11f
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0MTA5 Cluster: HMG176; n=1; Helicoverpa armigera|Rep: ...    55   1e-06
UniRef50_A7GWF3 Cluster: 2-hydroxyglutaryl-CoA dehydratase, D-co...    33   4.9  

>UniRef50_Q0MTA5 Cluster: HMG176; n=1; Helicoverpa armigera|Rep:
           HMG176 - Helicoverpa armigera (Cotton bollworm)
           (Heliothis armigera)
          Length = 176

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
 Frame = +1

Query: 145 LSIGTIASNDRLLRSFSVTRGVTATS-QIVDLRYTAPNSMRIRAIRVRQVGASQFATXXX 321
           +S+G I ++DRLL + + +R   A   Q V++RYT  +S+ I A+R    G+ Q AT   
Sbjct: 76  MSLGNIGASDRLLSASTHSRNPIANQVQTVNVRYTGSSSIIILAVRA--YGSGQGATARV 133

Query: 322 XXXXXXWNTVTLRFINSPRRGFNFNVQIWG 411
                  N++T++  ++  RGF++ ++IWG
Sbjct: 134 VEGYLGRNSITIQLQSARGRGFHYRIEIWG 163


>UniRef50_A7GWF3 Cluster: 2-hydroxyglutaryl-CoA dehydratase,
           D-component; n=2; Campylobacter|Rep:
           2-hydroxyglutaryl-CoA dehydratase, D-component -
           Campylobacter curvus 525.92
          Length = 385

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 339 LEHRHSSVHKLTAQRI*L*CTDLGMLRLICPPIQKKAYRLFALCKCTISKNIRN*FN 509
           +++  S+VHK   + I   C   GM   I PPI++    + A   CT SKN  N  N
Sbjct: 231 VKNGESAVHKSAKRIIITGCPSGGMFDKIVPPIEEAGGVVVAFENCTGSKNFSNLIN 287


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,070,301
Number of Sequences: 1657284
Number of extensions: 12080402
Number of successful extensions: 30093
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30084
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)