Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d10r
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674...    29   5.3  
02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538...    29   5.3  

>06_03_0732 +
           23965090-23965431,23965610-23965746,23967359-23967417,
           23968817-23970135
          Length = 618

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -1

Query: 245 TMSLCFNG--TMEVNYS-FCYTLSFNEICLRDFGTTPVLDINSPHNFQIRS*GSSY 87
           T+SL F G   ++V+ S   YT+S +++CL   G     D+    N Q+++ G +Y
Sbjct: 549 TVSLLFQGGAALDVDASGIMYTVSASQVCLAFAGNEDGGDVGIVGNTQLKTFGVAY 604


>02_02_0431 -
           10152228-10152352,10152688-10152919,10153602-10153808,
           10153915-10154034,10154114-10154260,10155080-10155147,
           10155502-10155667,10156765-10156914,10157219-10157335,
           10158177-10158281,10159050-10159147,10159594-10159763,
           10161489-10161511,10161927-10162006,10162191-10162259,
           10163198-10163442,10163614-10163810
          Length = 772

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 420 ICAATKKRLRITGIDLYIGFILQWLSEAFCIPFLYSLRH 304
           IC  T+K     GI ++I   + ++ +  CIP +Y  RH
Sbjct: 135 ICQFTEKSNNFWGIQVHIFLGVLFVLDVVCIPCIYKGRH 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,137,936
Number of Sequences: 37544
Number of extensions: 305149
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)