Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d10r
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    27   0.19 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.77 
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    25   1.0  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   3.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 164 RDFGTTPVLDINSPHNFQIRS*GSSY 87
           RDF TTP + +  PH F      S+Y
Sbjct: 356 RDFQTTPTVSVEQPHLFLYPEVSSTY 381


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 448 VCRQILKSLNMCRNKKKVENHWH 380
           +C+++  SLN  RN K + +  H
Sbjct: 37  ICKRVYSSLNSLRNHKSIYHRQH 59


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 687 HKSAAEQWLRITGLCN*HGFVV 752
           H S+AE W +  G C  H  +V
Sbjct: 39  HMSSAEGWFKAIGTCGSHIIIV 60


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 598 NTLKFNIYLNPQKKYSIF 545
           +T+K  I   P+KKYS++
Sbjct: 98  STMKIKIIAPPEKKYSVW 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,505
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)