Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19d10f
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 46 6e-06
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 34 0.025
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 31 0.24
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 30 0.41
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 27 2.9
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.1
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 5.1
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy... 25 8.9
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.9
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 8.9
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 8.9
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 46.0 bits (104), Expect = 6e-06
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Frame = +1
Query: 331 KLDTP--TSNMDTLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILV 504
KL TP SN + LLK+ +GTG+L +PKAFK GL+ T+++ V +H ++L
Sbjct: 268 KLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSA-TLLIVGVLSHICFLL- 325
Query: 505 KCAHVLYKKTKKTQMSFAEVGEAALDNGPQPLRKWANAFRIFIVISLFITYFGTCSVYTV 684
L + K SF ++G GP R I+ S+ ++ G S Y
Sbjct: 326 -----LIQTRMKVPGSFGDIGGTLY--GPH--------MRFAILASIVVSQIGFSSAYIS 370
Query: 685 IIARNI 702
+A +
Sbjct: 371 FVASTL 376
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 361 TLTHLLKASLGTGILAMPKAFKAAGLINGILFTVIVAVVCTHCSYILVKCA 513
++ +L LG GIL++P AF GL+ G L V A Y + +CA
Sbjct: 24 SVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFVSQCA 74
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 368 VRVSIFEVGVSNFLSVNGSKSPDSASFVMLYLLTIFSLFFSSGD 237
++V+ F VGVSN VNG S SF + +T L++ G+
Sbjct: 828 IKVNTFSVGVSNSRFVNGQFRVSSISFCFTHAVTEKVLYYYYGN 871
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 220 ELETFISPDEKNKEKIVSKY-NMTKDAESGDFDPFTERKLD 339
E+E P E+NK++I K N+ D E+ +P+T+ K D
Sbjct: 119 EIEVDAEPKEENKKEIPEKLKNVKVDTENPSAEPYTKAKGD 159
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 610 ANAFRIFIVISLFITYFGTCSVYTVIIARNILQIIQFYCGDII 738
+N R+F V+ LF ++G + + + L+++ +C II
Sbjct: 552 SNILRLFYVLFLFACFYGLDYILCAELLQAFLRVVFTFCEHII 594
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 597 RLWTVIQSRLAHFRKGHLSFFRLL 526
R+W + +++ H +GH+S R L
Sbjct: 414 RVWNIEKAKCTHIFRGHISIIRCL 437
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 211 APQELETFISPDEKNKEKIVSKYNMTKDAESGDFDPFTERKLDTPTSN 354
APQ L F +PD + I K E+ + D E L T +SN
Sbjct: 155 APQRLSDFFTPDGRRVSNIRDSLISEKRLEN-NIDQVQESALSTASSN 201
>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 669 ARPKVRYKETNDDEYPESIRPFS*RLWTVIQSRLAHFRKGHLSF 538
A PK + +D PESI PF L + L + H +F
Sbjct: 232 ASPKNNRSDESDQSDPESIDPFCDNLQALSMHELELLEEKHSNF 275
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 124 TDK*PNLRFTGKSIDQRCKMVNEPNGAIPAPQELETFISPDEKNKEKIVSKYNMTKD 294
TDK L F + + AIP P E++ + DEK+ + + + +T D
Sbjct: 822 TDKSSPLLFLAEQAASASEAAAPDLAAIPIPNEVDDAEAADEKDGKLVEEEQRVTGD 878
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 190 EPNGAIP-APQELETFISPDEKNKEKIVSKYNMTKDAE 300
E A P PQE+ +S ++ ++ V KY TKD E
Sbjct: 274 EAKSAAPDEPQEIIKSVSGGKRRGKRKVKKYATTKDEE 311
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 478 CTHCSYILVKCAHVLYKKTKKTQMSFAEVGEAALD-NGPQPLRKWANAFRIFIVISLFI 651
CTH +I ++CA+V + K +S +V A D N PL A A R IV +L +
Sbjct: 55 CTHALFISIQCANV---QMVKHILSVFDVDVNAYDKNKNTPLHLAAMAGRQDIVEALLL 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,398
Number of Sequences: 5004
Number of extensions: 71831
Number of successful extensions: 215
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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