Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d08r
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.71 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   6.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 191 TCIFPNAPIATCGGNITGFV*VPPTIPIFDIVNVP 295
           TC+  NA   +  G +   V VPPTI  F    +P
Sbjct: 560 TCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLP 594



 Score = 25.0 bits (52), Expect = 0.94
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 846 DMLSHLNINSDDSNEVVLPGSVRAVEIPVTKAQARVEL 733
           D++SHLNI+S  +N+  L   + A ++   +  AR+ +
Sbjct: 451 DVVSHLNISSTHTNDGGLYKCIAASKVGSAEHSARLNV 488


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 175 IKSRENLYFS*CSNCNLRWEY 237
           +KS  N+Y   C+NC    +Y
Sbjct: 36  LKSHSNVYQYRCANCTYATKY 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 306 DLTGGTFTISNIGIVGGTYTKPV 238
           D T G  + + +G+VGGT    V
Sbjct: 2   DTTNGGGSSAGVGVVGGTIASVV 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,555
Number of Sequences: 438
Number of extensions: 5556
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)