Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19d05r
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 29 0.62
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.4
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 27 2.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.4
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 27 4.4
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 26 5.8
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.8
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 26 7.6
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 7.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 7.6
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 26 7.6
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 747 WLPVVDRGYFVGTDFHLPYIVQVQDWKLH*DSKAF 643
W P D + D HLPY + V DW D+ A+
Sbjct: 373 WGPTCDSLDVIANDAHLPYELNVGDWIYFEDAGAY 407
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 532 IREGLSFSRNTFASSLNESQVLRSPAD 612
+R+GLS +N+F S N SQ+ +SP+D
Sbjct: 36 VRKGLSKFKNSFLSRKNSSQI-KSPSD 61
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 613 LGPQDSLERKESFRVSMKFPVLYLYNVRQMEIGT 714
LGP DS+ F S+KFP+ Y + +E T
Sbjct: 44 LGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTT 77
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +1
Query: 565 FASSLNESQVLRSPAD---LGPQDSLERKESFRVSMKFPVLYLYNVRQMEIGTNKIPTIN 735
F + +N + + P D LG L K F KFP L+ Y +R++E+ + + +
Sbjct: 877 FTALINRAFGSKKPKDAVNLGNNKGLSTKMFFS---KFPTLHDYLLRELEVSVASLSSND 933
Query: 736 NR*PATYPAIPPKSNASY 789
YP + S Y
Sbjct: 934 QPSTGLYPILNMFSRLQY 951
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 643 ESFRVSMKFPVLYLYNVRQMEIGTNKIPTINNR 741
E+ V + LYL N++ IG N IP NN+
Sbjct: 110 EAPEVYFENDTLYLANLKNQNIGDNVIPYPNNK 142
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 544 LSFSRNTFASSLNESQVLRSPAD 612
L S+ T +SSLN+S +LR PA+
Sbjct: 316 LGASQTTDSSSLNQSSLLRRPAN 338
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 27 LLIYCINLIAIEIFFSSLTRMLHIVMN 107
LLI C +E FF+ + +LH V+N
Sbjct: 537 LLILCKGFEGLETFFAYIVHLLHGVLN 563
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 662 IETLKLSFRSKESWGPRSAGERRTWLSFKEDAKVLREK 549
I+TLKL E W P +AG T + + + K L ++
Sbjct: 522 IKTLKLIEEKDEYWEPETAGYFNTIVGWADQRKSLYDE 559
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 9 LVLPIWLLIYCINLIAIEIFFSSL 80
L+ P+ +IY I LI I I+FS L
Sbjct: 359 LLHPVHTVIYTITLICITIYFSLL 382
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +2
Query: 68 FFFTNQDAPYRYELQSDNKINDDQLDNSE*AYLLFLTNFKHVNN 199
+F+ RY++ +D +N D LD A L + H +N
Sbjct: 351 YFYPPSVFSNRYQILADGLVNSDTLDTGFLAVALLIVVLGHFSN 394
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 616 GPQDSLERKESFRVSMKFPVLYLYN 690
GP D+ F++SM FP Y Y+
Sbjct: 67 GPSDTYYEGLKFKISMSFPANYPYS 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,533
Number of Sequences: 5004
Number of extensions: 62297
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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