Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d05r
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435...    28   8.1  

>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
            23344150-23344226,23344309-23344587,23344800-23344885,
            23344960-23345027,23345721-23345904,23346071-23346204,
            23346776-23347039,23347613-23347677,23347833-23348407,
            23348501-23348680,23348765-23348928,23349008-23349261,
            23349405-23349562,23349808-23349948,23350176-23350282,
            23350651-23350737,23350812-23350901,23350974-23351055,
            23351370-23351561,23351748-23351816,23351959-23352294,
            23352694-23352837,23352963-23353126,23353817-23353883
          Length = 1463

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 667  TSLRL*SFLSAPRNLG-VQDQLANAEPGFHLKKTRKYYEKNLIPHESRMS 521
            T  R+ S    PRN+  ++++ AN+EP FH    RK ++  L P  +R S
Sbjct: 886  TGTRVRSEAKIPRNISDIENEFANSEPTFH--SNRKAWK--LPPQSTRQS 931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,539,161
Number of Sequences: 37544
Number of extensions: 334694
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)