Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d05r
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81565-1|CAB04580.1|  344|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical...    29   5.4  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    29   5.4  
Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z81565-1|CAB04580.1|  344|Caenorhabditis elegans Hypothetical
           protein K06G5.3 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +3

Query: 660 NEVSSPVLVQCKADGNRYQQNTHDQQQVTSHISGHSS 770
           N    PVL +  +D N Y   THDQ        GHSS
Sbjct: 14  NSPQDPVLNRQVSDDNEYGGMTHDQWLYVQMYFGHSS 50


>AL032632-14|CAO82067.1|  504|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12b protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 701 WKSVPTKYPRSTTGNQPHIRPFLRR 775
           WK  P +YPR+TT    H   FL +
Sbjct: 396 WKGEPNRYPRTTTTPTHHFEFFLSK 420


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 701 WKSVPTKYPRSTTGNQPHIRPFLRR 775
           WK  P +YPR+TT    H   FL +
Sbjct: 399 WKGEPNRYPRTTTTPTHHFEFFLSK 423


>Z49867-2|CAA90028.1|  346|Caenorhabditis elegans Hypothetical
           protein C33D3.4 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 359 KFYKNIRFILTNITHKITQVLSHLEIYKLIID*IVRHFLLLMYLIDAILFNRI 201
           KF+ N+ F       K+  ++  L I++ +++    + L  ++ I AI+FN+I
Sbjct: 46  KFFANVEFNAIEFVFKLLSLIKMLIIFRRMLEKWDSNRLYSIFSILAIIFNKI 98


>Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical
           protein T05G5.2 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 502 LPIKLYQTCVIREGLSFSRNTFASSLNESQVLRSPADLGPQDSLERKES 648
           LP  +  TC     L   R+TFASSL     ++ P+   PQ +    +S
Sbjct: 114 LPAPIAATCAPDHSLVDYRSTFASSLAPPVPMQMPSVFSPQPTFPYMKS 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,179
Number of Sequences: 27780
Number of extensions: 334537
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)