Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19d01f
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.2  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   8.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 449 VAGDQFGCITIELVSTLVPPLKSVTEPR 366
           V  +  G  ++E V T+  PLK+  EP+
Sbjct: 308 VVNNSVGGESVETVLTVTAPLKAKIEPQ 335


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 420 NRTGLNSGATAEECHGTKNDRYARALVGAIEPAVSSC 310
           +R GL     A         +Y+ A  G  +P+VSSC
Sbjct: 102 SRKGLFWSPAATAAATATEYKYSAAAPGPSDPSVSSC 138


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 565 SAVASGFGLTSSSGSITTNQVLSH 636
           S V SG    SSS S  T+Q L H
Sbjct: 55  SGVTSGSDFHSSSPSSDTSQDLQH 78


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 764 RGPPESPRQVPTPPRPLVHKFEDCKTKGKANVQTKL 657
           R  PE  +   T P  L      C  K KANV+  L
Sbjct: 50  RCTPEGKKLKSTIPEALSTDCAKCNEKVKANVRKVL 85


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +2

Query: 290 LPLTDY*QLLTAG 328
           LPLTD  QLL AG
Sbjct: 238 LPLTDQVQLLRAG 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,098
Number of Sequences: 336
Number of extensions: 4229
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)