Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c21f
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical ...    96   2e-20
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    27   7.6  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    27   7.6  

>AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical
           protein C34B2.8 protein.
          Length = 171

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 51/129 (39%), Positives = 72/129 (55%)
 Frame = +1

Query: 52  KQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRS 231
           +QD+PP GGY+   F R   K  +S  T+ A   G T   +Y      K+ + ++ E   
Sbjct: 8   RQDMPPKGGYRAFNFHRTFPKLVWSPGTVVAAIFGATAYGVYAALEGKKKDITEKFEDVD 67

Query: 232 AKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVEP 411
              A+ P L AERDR +LK L +NR  E E+M+DVPGW+ GT+YGE VY  +  D+  +P
Sbjct: 68  INNAMEPFLTAERDRYWLKLLAKNRALEEEIMKDVPGWKTGTWYGEPVYFTL-GDKWWDP 126

Query: 412 IFQEYYAHS 438
              E + HS
Sbjct: 127 TATEVFVHS 135


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 259 LAERDREYLKQLRRNRDAE----AELMRDVPGWEVGTYYG---ERVYKLIPPDQLVEPIF 417
           +++  R+   +L RNR++     A L R V G    + YG   E     IPP  +V  + 
Sbjct: 97  VSDYSRDRTTKLDRNRNSPELIVALLQRKVQGIRFSSNYGREEEPCVIEIPPGTMVREMA 156

Query: 418 QEYYAHSDIKEW 453
            + +  S++KEW
Sbjct: 157 DDDWKMSELKEW 168


>Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical
           protein T09F5.2 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +1

Query: 115 SYFSGYTMFAGFIGMTIGSIYLYNITYKR---ILKDEIEMRSAKMAI 246
           S+F G+T+ A F+ +  G  ++Y   Y R   I+  E+E  S K ++
Sbjct: 32  SFFIGFTVSAVFVLIAFGVSFIYFAQYDRTVKIIPKELEKSSRKSSL 78


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical protein
            F46C3.1 protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 420  LEDWFDQLVGGNKFVDAFSVVSTDLPPGNVSHQL 319
            +++W  QL  G +++     +  DL PGNV   L
Sbjct: 910  MKNWIKQLASGLEYLHNKGFIHRDLKPGNVFFSL 943


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical protein
            F46C3.1 protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 420  LEDWFDQLVGGNKFVDAFSVVSTDLPPGNVSHQL 319
            +++W  QL  G +++     +  DL PGNV   L
Sbjct: 910  MKNWIKQLASGLEYLHNKGFIHRDLKPGNVFFSL 943


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha kinase
            protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 420  LEDWFDQLVGGNKFVDAFSVVSTDLPPGNVSHQL 319
            +++W  QL  G +++     +  DL PGNV   L
Sbjct: 910  MKNWIKQLASGLEYLHNKGFIHRDLKPGNVFFSL 943


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
            translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 420  LEDWFDQLVGGNKFVDAFSVVSTDLPPGNVSHQL 319
            +++W  QL  G +++     +  DL PGNV   L
Sbjct: 910  MKNWIKQLASGLEYLHNKGFIHRDLKPGNVFFSL 943


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,043
Number of Sequences: 27780
Number of extensions: 274907
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)