Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c19r
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    26   0.32 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    26   0.32 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   9.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.1  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 408  MTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGLLTPESTLKQWRVA 229
            + L+  Y   +KIN  +IS  Y G    ++ G     G +   L+G       L QW   
Sbjct: 862  LDLLMDYEHTVKINE-NISMLYIGYQIILMIGTVIGPGTIFLMLVGAFVAAFGLDQWSSF 920

Query: 228  FW 223
            +W
Sbjct: 921  YW 922


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 408  MTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGLLTPESTLKQWRVA 229
            + L+  Y   +KIN  +IS  Y G    ++ G     G +   L+G       L QW   
Sbjct: 862  LDLLMDYEHTVKINE-NISMLYIGYQIILMIGTVIGPGTIFLMLVGAFVAAFGLDQWSSF 920

Query: 228  FW 223
            +W
Sbjct: 921  YW 922


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 242 NGVWRFGCVSAY 207
           NG WR+ C S Y
Sbjct: 22  NGAWRWECKSNY 33


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 188 TTFVTTNTPRHTQNATRHCFSVDSGVKSP 274
           +T+ T  TP    + T +C+S+ S    P
Sbjct: 305 STWSTVQTPTTVMSPTINCWSLTSSPPPP 333


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 522 FEYCGNLF*YRSHKPNRRRTKRSTSLHT 605
           F+ CG     +  K  R  T++STS  T
Sbjct: 365 FKLCGMKIVKKRRKDKREITRKSTSSST 392


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 588 IASFFFGLVCDFCIKRGYH 532
           IA F F L+CD  +K  YH
Sbjct: 13  IAGFLFLLICDSYLKI-YH 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,222
Number of Sequences: 336
Number of extensions: 4314
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)