Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c19r
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.6  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   9.8  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    25   9.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 146 TSGNMAIPRIGSMDLCRREQLTRRNKKRK 60
           T+ + + PR+G ++  ++E LT+RN + K
Sbjct: 796 TTKSSSAPRMGMLEQLKQEYLTKRNFESK 824


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 82  VNCSRRQRSMLPIRGIAMFPDVVPPKLFTFREHK 183
           +N S +Q + +P   I    D  PPK  T  +HK
Sbjct: 398 INESEQQATHIPNSSIKFNYDYTPPKSATSHKHK 431


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 TPRHTQNATRHCFSVDSGVKSPIKYGETIPEI 304
           TPRH Q A R    +D+ +++ I  G  +P I
Sbjct: 121 TPRHLQLAIRGDEELDTLIRATIAGGGVLPHI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,776
Number of Sequences: 5004
Number of extensions: 70273
Number of successful extensions: 193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)