Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19c19f
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 74 1e-13
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 65 6e-11
11_01_0557 + 4394754-4396040 54 1e-07
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 52 3e-07
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 50 2e-06
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 48 1e-05
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 42 4e-04
05_01_0254 - 1938343-1938447,1938545-1938700,1939209-1939472,193... 32 0.52
12_02_0526 - 20032206-20033106,20034853-20035181 31 0.69
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 30 1.6
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 30 2.1
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 29 3.7
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 28 6.4
11_06_0110 + 20212221-20214011,20214072-20214368 28 8.5
01_06_1718 - 39408179-39408427,39409102-39409217,39409460-394096... 28 8.5
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 73.7 bits (173), Expect = 1e-13
Identities = 40/126 (31%), Positives = 64/126 (50%)
Frame = +2
Query: 5 YMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATG 184
Y V N+K SA+P+ M ++ + G DF IK G+ S+ RKI +I G
Sbjct: 369 YFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGF-SVALVRKIMQSIGFIG 427
Query: 185 PGICIILASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAA 364
PG+ ++ ++ + AV + A++L +G N DI+P YAG+ + NGI
Sbjct: 428 PGVSLLCLRFAQTPSVAAVLMTI-ALSLSSFSQAGYFCNVQDIAPKYAGSLHGLTNGIGT 486
Query: 365 ISGIVS 382
++ IVS
Sbjct: 487 VAAIVS 492
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 64.9 bits (151), Expect = 6e-11
Identities = 39/125 (31%), Positives = 58/125 (46%)
Frame = +2
Query: 5 YMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATG 184
Y + N++ SALP+V M + + G+V D I+ G SI RKI TI G
Sbjct: 324 YFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGT-SITLTRKIMQTIGFVG 382
Query: 185 PGICIILASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAA 364
PG+ + L + +A W A+ L +SG +N +I+P YAG M N
Sbjct: 383 PGVAL-LGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGT 441
Query: 365 ISGIV 379
+ I+
Sbjct: 442 FAAIL 446
>11_01_0557 + 4394754-4396040
Length = 428
Score = 53.6 bits (123), Expect = 1e-07
Identities = 36/173 (20%), Positives = 74/173 (42%), Gaps = 8/173 (4%)
Frame = +2
Query: 20 LKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICI 199
L+ +++ G LPY+ M++ S G++ D I R S+ RK+ T+ I +
Sbjct: 256 LQLSLQDMGFSKMLPYLNMFLFSNIGGVLADHLITRKILSVTKTRKLLNTVGFVVSAIAL 315
Query: 200 ILASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIV 379
+ + A+F ++ + +G +N +D++P +AG + N ++GIV
Sbjct: 316 MALPLFRTPSG-AIFCSSVSLGFLALGRAGFAVNHMDVAPKFAGIVMGISNTAGTLAGIV 374
Query: 380 SPYLIGLLTPE--------STLKQWRVAFWXXXXXXXXXXXXXXMFAKGEQLW 514
L G + ++ + WR F+ +F+ GE+++
Sbjct: 375 GVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYLCIFSSFIFLIFSTGEKIF 427
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 52.4 bits (120), Expect = 3e-07
Identities = 36/106 (33%), Positives = 50/106 (47%)
Frame = +2
Query: 17 VLKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGIC 196
VLKFN+ +G+L LP++ M I + G + D + RG SI N RKI +I GP +
Sbjct: 360 VLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRGV-SITNVRKIMQSIGFLGPALF 418
Query: 197 IILASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGT 334
+ L S +AV + SG+ N DI P GT
Sbjct: 419 LTLLS-KVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRVFGT 463
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Frame = +2
Query: 20 LKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICI 199
L+ +++ G LPY M+I S G+V D I R SI RK+ TI + +
Sbjct: 255 LQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILSITKTRKLLNTIGFVVSAVAL 314
Query: 200 I-LASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGI 376
+ L + T+ +G +G +N +D++P +AG + N ++GI
Sbjct: 315 MALPLFRTPSGTVLCSSISLGFLALGR--AGFAVNHMDVAPKFAGIVMGVSNTAGTLAGI 372
Query: 377 VSPYLIG 397
V L G
Sbjct: 373 VGVGLTG 379
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 5 YMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATG 184
Y VLKFN+ +G+ LP++ M +++ F G + D + RG S+ RKI +I G
Sbjct: 364 YYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGL-SVTTVRKIMQSIGFLG 422
Query: 185 PGICIILASY 214
P + S+
Sbjct: 423 PAFFLTQLSH 432
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 42.3 bits (95), Expect = 4e-04
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = +2
Query: 50 LSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICIILASYS-GCD 226
+S LP + I + D I G + + RKI TIA P ++L+S G
Sbjct: 329 VSVLPPLGSMIITSIAAPFADNLISNGVDTTK-VRKICQTIAFLSPATFMMLSSVDLGVP 387
Query: 227 TTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGLLT 406
V + + L SG+ DIS YA + N + A+ GIV L G L
Sbjct: 388 PWEIVAFLTSGLALSSFALSGLYCTHQDISREYASILLGITNTVGAVPGIVGVALTGYLL 447
Query: 407 PESTLKQWRVAFW 445
T W ++ +
Sbjct: 448 --DTTHSWSISLF 458
>05_01_0254 -
1938343-1938447,1938545-1938700,1939209-1939472,
1939563-1939777,1939863-1940672,1941758-1942388
Length = 726
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -3
Query: 379 DDSGNCCNTVDHSRSGTSIVGRNIKWIDFHTTVVGTHESHCKHEPKHSQ 233
DDSG C G+ G ++KW D + +V+ T + H K +
Sbjct: 397 DDSGRCTLRSSLKAVGSKNAGHSVKWADENGSVLETSRAFVSHSSKSQE 445
>12_02_0526 - 20032206-20033106,20034853-20035181
Length = 409
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = -3
Query: 349 DHSRSGTSIV--GRNIKWIDFHTTVVGTHESHCKHEPKHSQCG-ITTRI*GQNNTNSRTS 179
DH +SI+ G ++ + H T++ + H ++ +++ I +N+N S
Sbjct: 277 DHHHHSSSILFGGASVPPLLDHQTILDDDDDHPNKTGSNTTAATLSSNITDNSNSNKNNS 336
Query: 178 RSDGSVNFSCILNTVVTSFNTEVTNQTEEERSDPHRYIRQ 59
++ +++ SC ++ + +S N +++ H+ ++Q
Sbjct: 337 DNNNNISSSCCISLMNSSSNMIYWEGHHQQQQQQHQMLQQ 376
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 242 FWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGL 400
FW++F M +YY+ + + ++PNY +T + G + + S +LI L
Sbjct: 1249 FWYLFFMYFTLSYYTFYGMMAVGLTPNY-NMSTVVSTGFYTMWNLFSGFLIPL 1300
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 161 YTTIAATGPGICIILASYSGCDTTLA-VFWFVFAMTLMGAYYSGMKINPLDISPNY 325
YT + AT GI I+ + G + T A FW++F M Y++ + + ++PNY
Sbjct: 1294 YTLVQATVYGI--IVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNY 1347
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 32 IKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQ 145
++S G+L + ++++ A FFG + CIKR Y ++
Sbjct: 275 VRSDGVLPSGAVMSLYFAPAFFGHLLGKCIKRKYPIVE 312
>07_01_0783 +
6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 243 FGSCLQ*LSWVPTTVV*KSIHLIFLPTMLVPLRLW 347
FGS +SW P T S H +F ++ LRLW
Sbjct: 623 FGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLW 657
>11_06_0110 + 20212221-20214011,20214072-20214368
Length = 695
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 186 LEFVLFWPHILVVIP--HWLCFGSC-LQ*LSWVPTTVV*KSIHLIFL 317
L VL WPH+L +IP +L SC LQ + PT + + + ++ L
Sbjct: 211 LSTVLDWPHVLNMIPSLKFLSLSSCSLQSANQYPTQINLRQLEILDL 257
>01_06_1718 -
39408179-39408427,39409102-39409217,39409460-39409603,
39409700-39410930,39411213-39411494
Length = 673
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 527 RKHGYPANWKHGPLPSRTVDSEEQKEKTDDK 619
RK GYPAN + + S+ V +K++TD++
Sbjct: 194 RKTGYPANNQMVKVSSKDVVKRRKKQRTDEQ 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,616,174
Number of Sequences: 37544
Number of extensions: 441364
Number of successful extensions: 1034
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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