Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c19f
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 260 LQTRTKTQPVWYHN 219
           L+TRTK QP ++H+
Sbjct: 29  LRTRTKLQPTYFHH 42


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 260 LQTRTKTQPVWYHN 219
           L+TRTK QP ++H+
Sbjct: 29  LRTRTKLQPTYFHH 42


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 480 TTFVTTNTPRHTQNAT 433
           TT  TT TP  TQNA+
Sbjct: 670 TTTTTTTTPNTTQNAS 685


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   MTDVLKFNIKSTGILSALPYVAMWIASFFFGLVC 109
           +T VL     STG+ S+LP ++   A   + ++C
Sbjct: 278 ITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMC 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,057
Number of Sequences: 438
Number of extensions: 5515
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)