Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c18r
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   5.7  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   5.7  
Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical p...    28   7.6  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    28   7.6  

>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 176 IFFSQNKVTILLASFQVWNVPSKYRHEVPIPFVMP 72
           + F+ +   I+  S   W + S+YRH VP+  + P
Sbjct: 525 LIFTTSNNYIVYFSLSEWAIVSEYRHVVPVRSIFP 559


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 176 IFFSQNKVTILLASFQVWNVPSKYRHEVPIPFVMP 72
           + F+ +   I+  S   W + S+YRH VP+  + P
Sbjct: 525 LIFTTSNNYIVYFSLSEWAIVSEYRHVVPVRSIFP 559


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 176 IFFSQNKVTILLASFQVWNVPSKYRHEVPIPFVMP 72
           + F+ +   I+  S   W + S+YRH VP+  + P
Sbjct: 525 LIFTTSNNYIVYFSLSEWAIVSEYRHVVPVRSIFP 559


>Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical
           protein F54C9.8 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 146 LLASFQVWNVPSKYRHEVPIPF-VMPTKLKTKFSVMTNKISFYINLLF 6
           ++ S Q  NVP    +E P+P+  MPT L    +   NK++F  N +F
Sbjct: 505 IIESLQKLNVPMTMTNE-PMPYWAMPTPLMDISAHFMNKLNFQKNSVF 551


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
 Frame = -1

Query: 289 TLNVEYCIKITQDLIACRSPCRILYSLILSLLFDGNQTFS--------FLKI-KLQSCLL 137
           T+  ++ I I   +++    C I Y LILS+++   + F         FL I  +  CL 
Sbjct: 15  TIQSDWIIGILMMIVSMS--CAIAYYLILSIIYKDKELFRMASYRFMFFLGIFDVFQCLP 72

Query: 136 HFRSGMFRVNTGMRYP 89
           HF +G+F +   + +P
Sbjct: 73  HFVTGIFTIKQSVFHP 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,786
Number of Sequences: 27780
Number of extensions: 399413
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)