Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c15r
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    27   4.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   7.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   7.5  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   7.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   10.0 

>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 715 GYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVCDF 572
           GY   + +  K+MTDVL  ++ S G  S +      ++S   G   DF
Sbjct: 125 GYRLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDF 172


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 748 ALIIAGIGHDWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVC 578
           +LIIA +   W YFT      KY+T  +  NI         P++A   +S FF + C
Sbjct: 283 SLIIAPL---WIYFTF-----KYITTCIHANIDIVHFYLETPFLAGIFSSIFFWVWC 331


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 165 TSGNMAIPRIGSMDLCRREQLTRRNKKRK 79
           T+ + + PR+G ++  ++E LT+RN + K
Sbjct: 796 TTKSSSAPRMGMLEQLKQEYLTKRNFESK 824


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 727 GHDWGYFTMVTDLPKYMTDVLKFNIKST 644
           G  W +++   + P+   D  K N KST
Sbjct: 377 GRKWEFYSYAKEFPELFPDAYKLNEKST 404


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 773 SSAICTFVGSHYRWNWTRLGILHDGN*FTKIHDR 672
           +SA+C      + W W+     HDG+   +  DR
Sbjct: 499 NSALCALTEGGHAWFWSVSNEAHDGSAVLRFIDR 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,850,867
Number of Sequences: 5004
Number of extensions: 88570
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)