Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19c15r
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 104 1e-22
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 84 2e-16
11_01_0557 + 4394754-4396040 80 2e-15
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 76 3e-14
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 75 7e-14
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 52 4e-07
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 42 5e-04
05_01_0254 - 1938343-1938447,1938545-1938700,1939209-1939472,193... 32 0.64
12_02_0526 - 20032206-20033106,20034853-20035181 31 0.85
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 30 2.0
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 30 2.6
07_01_0460 + 3486040-3486758,3486804-3486876,3487067-3487132,348... 29 4.5
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 28 7.9
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 104 bits (249), Expect = 1e-22
Identities = 50/156 (32%), Positives = 85/156 (54%)
Frame = -1
Query: 772 LLRSVPLWALIIAGIGHDWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWIASFF 593
+L + +WA+I+A + ++WGYF +++ +P Y V N+K SA+P+ M ++ +
Sbjct: 339 ILSKIEMWAIIVANVVNNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYV 398
Query: 592 FGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICIILASYSGCDTTLAVFWFVFAMTLMG 413
G DF IK G+ S+ RKI +I GPG+ ++ ++ + AV A++L
Sbjct: 399 AGASADFLIKSGF-SVALVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVL-MTIALSLSS 456
Query: 412 AYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVS 305
+G N DI+P YAG+ + NGI ++ IVS
Sbjct: 457 FSQAGYFCNVQDIAPKYAGSLHGLTNGIGTVAAIVS 492
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 83.8 bits (198), Expect = 2e-16
Identities = 38/105 (36%), Positives = 60/105 (57%)
Frame = -1
Query: 787 IPWKGLLRSVPLWALIIAGIGHDWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMW 608
IPW +L P+WALI++ H+WG F ++T +P Y VLKFN+ +G+ LP++ M
Sbjct: 329 IPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 388
Query: 607 IASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICIILASY 473
+++ F G + D + RG S+ RKI +I GP + S+
Sbjct: 389 VSANFGGWIADTLVSRGL-SVTTVRKIMQSIGFLGPAFFLTQLSH 432
>11_01_0557 + 4394754-4396040
Length = 428
Score = 79.8 bits (188), Expect = 2e-15
Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 8/213 (3%)
Frame = -1
Query: 787 IPWKGLLRSVPLWALIIAGIGHDWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMW 608
IPW +L S+P+WA+++ + + ++ LP Y L+ +++ G LPY+ M+
Sbjct: 216 IPWARILFSLPIWAIVVNNFTFHYALYVLMNWLPTYFKLGLQLSLQDMGFSKMLPYLNMF 275
Query: 607 IASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICIILASYSGCDTTLAVFWFVFA 428
+ S G++ D I R S+ RK+ T+ I ++ + A+F +
Sbjct: 276 LFSNIGGVLADHLITRKILSVTKTRKLLNTVGFVVSAIALMALPLFRTPSG-AIFCSSVS 334
Query: 427 MTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGLLTPE--------S 272
+ + +G +N +D++P +AG + N ++GIV L G + +
Sbjct: 335 LGFLALGRAGFAVNHMDVAPKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLT 394
Query: 271 TLKQWRVAFWXXXXXXXXXXXXXLMFAKGEQLW 173
+ + WR F+ L+F+ GE+++
Sbjct: 395 SSESWRTVFFVPGYLCIFSSFIFLIFSTGEKIF 427
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 76.2 bits (179), Expect = 3e-14
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
Frame = -1
Query: 787 IPWKGLLRSVPLWALIIAGIGHDWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMW 608
IPW+ ++ S+P+WA+++ + + ++ LP Y L+ +++ G LPY M+
Sbjct: 215 IPWRRIIFSLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMF 274
Query: 607 IASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICII-LASYSGCDTTLAVFWFVF 431
I S G+V D I R SI RK+ TI + ++ L + T+
Sbjct: 275 IFSNIGGVVADHLITRRILSITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISL 334
Query: 430 AMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIG 290
+G +G +N +D++P +AG + N ++GIV L G
Sbjct: 335 GFLALGR--AGFAVNHMDVAPKFAGIVMGVSNTAGTLAGIVGVGLTG 379
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 74.9 bits (176), Expect = 7e-14
Identities = 43/136 (31%), Positives = 66/136 (48%)
Frame = -1
Query: 715 GYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNA 536
GYF +++ +P Y + N++ SALP+V M + + G+V D I+ G SI
Sbjct: 313 GYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNG-TSITLT 371
Query: 535 RKIYTTIAATGPGICIILASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAG 356
RKI TI GPG+ +L + +A W A+ L +SG +N +I+P YAG
Sbjct: 372 RKIMQTIGFVGPGVA-LLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAG 430
Query: 355 TTTAMVNGIAAISGIV 308
M N + I+
Sbjct: 431 VLHGMSNTAGTFAAIL 446
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 52.4 bits (120), Expect = 4e-07
Identities = 36/106 (33%), Positives = 50/106 (47%)
Frame = -1
Query: 670 VLKFNIKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGIC 491
VLKFN+ +G+L LP++ M I + G + D + RG SI N RKI +I GP +
Sbjct: 360 VLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLVGRGV-SITNVRKIMQSIGFLGPALF 418
Query: 490 IILASYSGCDTTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGT 353
+ L S +AV + SG+ N DI P GT
Sbjct: 419 LTLLS-KVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRVFGT 463
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 42.3 bits (95), Expect = 5e-04
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = -1
Query: 637 LSALPYVAMWIASFFFGLVCDFCIKRGYHSIQNARKIYTTIAATGPGICIILASYS-GCD 461
+S LP + I + D I G + + RKI TIA P ++L+S G
Sbjct: 329 VSVLPPLGSMIITSIAAPFADNLISNGVDTTK-VRKICQTIAFLSPATFMMLSSVDLGVP 387
Query: 460 TTLAVFWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGLLT 281
V + + L SG+ DIS YA + N + A+ GIV L G L
Sbjct: 388 PWEIVAFLTSGLALSSFALSGLYCTHQDISREYASILLGITNTVGAVPGIVGVALTGYLL 447
Query: 280 PESTLKQWRVAFW 242
T W ++ +
Sbjct: 448 --DTTHSWSISLF 458
>05_01_0254 -
1938343-1938447,1938545-1938700,1939209-1939472,
1939563-1939777,1939863-1940672,1941758-1942388
Length = 726
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 308 DDSGNCCNTVDHSRSGTSIVGRNIKWIDFHTTVVGTHESHCKHEPKHSQ 454
DDSG C G+ G ++KW D + +V+ T + H K +
Sbjct: 397 DDSGRCTLRSSLKAVGSKNAGHSVKWADENGSVLETSRAFVSHSSKSQE 445
>12_02_0526 - 20032206-20033106,20034853-20035181
Length = 409
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +2
Query: 338 DHSRSGTSIV--GRNIKWIDFHTTVVGTHESHCKHEPKHSQCG-ITTRI*GQNNTNSRTS 508
DH +SI+ G ++ + H T++ + H ++ +++ I +N+N S
Sbjct: 277 DHHHHSSSILFGGASVPPLLDHQTILDDDDDHPNKTGSNTTAATLSSNITDNSNSNKNNS 336
Query: 509 RSDGSVNFSCILNTVVTSFNTEVTNQTEEERSDPHRYIRQ 628
++ +++ SC ++ + +S N +++ H+ ++Q
Sbjct: 337 DNNNNISSSCCISLMNSSSNMIYWEGHHQQQQQQHQMLQQ 376
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 445 FWFVFAMTLMGAYYSGMKINPLDISPNYAGTTTAMVNGIAAISGIVSPYLIGL 287
FW++F M +YY+ + + ++PNY +T + G + + S +LI L
Sbjct: 1249 FWYLFFMYFTLSYYTFYGMMAVGLTPNY-NMSTVVSTGFYTMWNLFSGFLIPL 1300
>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 526 YTTIAATGPGICIILASYSGCDTTLA-VFWFVFAMTLMGAYYSGMKINPLDISPNY 362
YT + AT GI I+ + G + T A FW++F M Y++ + + ++PNY
Sbjct: 1294 YTLVQATVYGI--IVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNY 1347
>07_01_0460 +
3486040-3486758,3486804-3486876,3487067-3487132,
3488090-3488251,3488427-3488457,3488767-3489206
Length = 496
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 655 IKSTGILSALPYVAMWIASFFFGLVCDFCIKRGYHSIQ 542
++S G+L + ++++ A FFG + CIKR Y ++
Sbjct: 275 VRSDGVLPSGAVMSLYFAPAFFGHLLGKCIKRKYPIVE 312
>07_01_0783 +
6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 444 FGSCLQ*LSWVPTTVV*KSIHLIFLPTMLVPLRLW 340
FGS +SW P T S H +F ++ LRLW
Sbjct: 623 FGSLSPSVSWSPRTGEEISAHTVFSNAFILLLRLW 657
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,853,028
Number of Sequences: 37544
Number of extensions: 567265
Number of successful extensions: 1318
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -