Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c15r
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   8.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.0  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 427 LQTRTKTQPVWYHN 468
           L+TRTK QP ++H+
Sbjct: 29  LRTRTKLQPTYFHH 42


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 427 LQTRTKTQPVWYHN 468
           L+TRTK QP ++H+
Sbjct: 29  LRTRTKLQPTYFHH 42


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 207 TTFVTTNTPRHTQNAT 254
           TT  TT TP  TQNA+
Sbjct: 670 TTTTTTTTPNTTQNAS 685


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 781 WKGLLRSVPLWALIIAGIGHDWGYFTMVTDL 689
           WK       +  LI++  GHD  YF +  +L
Sbjct: 221 WKSARTRFDILPLILSANGHDPDYFDIPNEL 251


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 679 MTDVLKFNIKSTGILSALPYVAMWIASFFFGLVC 578
           +T VL     STG+ S+LP ++   A   + ++C
Sbjct: 278 ITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMC 311


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 721 DWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWI 605
           DW Y  MV D  +     L     + GIL   P++  ++
Sbjct: 470 DWKYVAMVIDRLQLYIFFLVTTAGTIGILMDAPHIFEYV 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,246
Number of Sequences: 438
Number of extensions: 6755
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)