Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c10f
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       34   0.021
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    29   0.46 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.4  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    27   3.2  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   7.4  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   7.4  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   7.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   7.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.8  
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.8  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   9.8  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 480 STQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHFTRKQPIQ 611
           +T N    +  T Y+K+P    ++   PY+ ++ +++  +QP+Q
Sbjct: 646 NTHNPFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNYQNQQPMQ 689


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 204 IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLH 380
           I +Q  S L +   L++ ++LD+ +K + TP   ++++ L+KG     KA    F  +H
Sbjct: 183 ILVQAFSPLTRGYRLSDIRLLDLSLKYNKTPANILLRYCLQKGVSPIFKA--SSFVHIH 239


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 5   NFYFLNPKGCG*FNFA*NMFEL*HFCKNAAFFKYCCSLCSMS-SGFALTQ 151
           N Y   PKGCG  N   ++F+  ++  N+ +F+   S   +  S FA  Q
Sbjct: 374 NIYINGPKGCGKSNLVHSLFD--YYSLNSIYFQMIVSCSEIDRSSFAKFQ 421


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +3

Query: 81  VKMLRFLSTAVRYAR--CLPASPLHNAITLTTKDVRHFSAFKNIE-----IQPRSLLPQN 239
           VKM  F    V+  R  C+ A     AI + +   +  S  + +      +Q  S L   
Sbjct: 185 VKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINSDLSTR 244

Query: 240 SLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKTVKAVIKRFFRLHWGGWIR 398
             L+N QI   ++  D + T  ++ F       KT+K V+ +   L W  W R
Sbjct: 245 KGLSN-QIAKEIVAQDPSSTSELLSFRSLVDSEKTIKDVLGQSTILEWVRWER 296


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 367 NRLITAFTVFLLPFFKLNFITDLVGVKSIFIKMSNI 260
           NRL +  T FL PF + N +     + + F++ S I
Sbjct: 289 NRLKSELTDFLTPFARENRVVTKEDISNFFLERSRI 324


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 171 KDVRHFSA--FKNIEIQPRSLLPQNSLLA 251
           K++ HF++  FKNI+IQ     P+  LLA
Sbjct: 93  KELDHFTSKPFKNIDIQNEQTNPKQLLLA 121


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +3

Query: 387 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRP 533
           G I   +  H  LW +  +N  R    +FC ST      +    Y   P
Sbjct: 117 GTISRLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSP 165


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 210 IQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIKFSLKKGKRKT--VKAVIKRFFRLH 380
           +Q R  + Q  +   ++I+ +  K     T  +IK  LK+GK+K   +K  +KR+  LH
Sbjct: 124 LQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVIIK--LKEGKQKVNLLKRSLKRYNELH 180


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 364 RLITAFTVFLLPFFKLNFITDLVGVKSIFIK 272
           +L  A+   L  F +L   + LVG+K++FIK
Sbjct: 408 KLFQAYRKTLTQFVRLTRSSPLVGLKNLFIK 438


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +3

Query: 204 IEIQPRSLLPQNSLLANKQILDILMKIDFTPTRSVIK---FSLKKGKRKTVKAVIKRFFR 374
           IE+   SLL  N   A      IL+ + F+   SVI    F+L + K  T    I    +
Sbjct: 10  IEVVINSLLNDNPAQAKFDKYSILVSLGFSSLLSVILLCIFTLLRTKFNTYDRCIPPMKK 69

Query: 375 LHWGGWI 395
             W GWI
Sbjct: 70  SLW-GWI 75


>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 190 EKCLTSLVVSVIALC 146
           EKC+T+L+++ I LC
Sbjct: 20  EKCITNLLITTILLC 34


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +3

Query: 432 KSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVEDPYAPYHTREEFHF 590
           ++SAN       +F       ++  +VT  WK   HY ++ +      EE  +
Sbjct: 65  RTSANIGNFSIVIFGGGVFGLIIYALVTSIWKGEAHYGDEAFELLKANEECRY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,541
Number of Sequences: 5004
Number of extensions: 56871
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)