Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19c08r
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   290   8e-79
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   288   3e-78
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   288   4e-78
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   4.4  
06_03_0290 - 19193707-19193752,19193822-19194090                       28   7.6  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  290 bits (712), Expect = 8e-79
 Identities = 135/214 (63%), Positives = 174/214 (81%)
 Frame = -2

Query: 720 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 541
           VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 540 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 361
           +++RK RL AE VQG+NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79  QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138

Query: 360 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 181
           CIGFT +     ++TCYAQ +Q+R IR+KM EI+    ++ +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIE 198

Query: 180 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 79
           KA   I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  288 bits (707), Expect = 3e-78
 Identities = 135/214 (63%), Positives = 173/214 (80%)
 Frame = -2

Query: 720 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 541
           VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 540 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 361
           +++RK RL AE VQG+NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79  QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138

Query: 360 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 181
           CIGFT +     ++TCYAQ +Q+R IR+KM EI+    ++ +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIE 198

Query: 180 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 79
           KA   I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 199 KATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  288 bits (706), Expect = 4e-78
 Identities = 135/214 (63%), Positives = 173/214 (80%)
 Frame = -2

Query: 720 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 541
           VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 540 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 361
           +++RK RL AE VQGRNVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79  QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138

Query: 360 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIE 181
           CIGFT +     ++TCYAQ +Q+R IR+KM EI+    +  +L+E+V+K IP+ I K+IE
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198

Query: 180 KACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 79
           K+   I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 199 KSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 228 EVVNKLIPDSIAKDIEKACHGIYPLRD 148
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 485 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 396
           +A S A T  P  S GW+  G  S+ P+L+
Sbjct: 67  AAGSAARTRSPSQSNGWITGGSASAMPSLV 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,423,305
Number of Sequences: 37544
Number of extensions: 483515
Number of successful extensions: 1418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)