Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19c05r
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 31 1.1
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 31 1.1
AF022967-5|AAB69878.1| 537|Caenorhabditis elegans Hypothetical ... 29 3.5
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z92812-3|CAB07282.2| 342|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 6 LQILNHTH*GGCLQNIVDDEEDDALNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENN 185
L I+ + G + N D ++DD L+ + +L +E K VI+S+ + L ++ N+
Sbjct: 305 LWIIKYAFEEGTVTNQADLDQDDKLDCIMNLDPSVYEDRKKAVIKSIKKVLQFIRVRSNS 364
Query: 186 FE 191
FE
Sbjct: 365 FE 366
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 6 LQILNHTH*GGCLQNIVDDEEDDALNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENN 185
L I+ + G + N D ++DD L+ + +L +E K VI+S+ + L ++ N+
Sbjct: 305 LWIIKYAFEEGTVTNQADLDQDDKLDCIMNLDPSVYEDRKKAVIKSIKKVLQFIRVRSNS 364
Query: 186 FE 191
FE
Sbjct: 365 FE 366
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 6 LQILNHTH*GGCLQNIVDDEEDDALNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENN 185
L I+ + G + N D ++DD L+ + +L +E K VI+S+ + L ++ N+
Sbjct: 305 LWIIKYAFEEGTVTNQADLDQDDKLDCIMNLDPSVYEDRKKAVIKSIKKVLQFIRVRSNS 364
Query: 186 FE 191
FE
Sbjct: 365 FE 366
>AF022967-5|AAB69878.1| 537|Caenorhabditis elegans Hypothetical
protein C13A2.6 protein.
Length = 537
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 579 RYPRAWTRPNLHRKSRRRLHFPNF*HLQR 493
RY W + H ++RR + PN H+QR
Sbjct: 374 RYNSTWIHYSYHDENRREIESPNLVHVQR 402
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +3
Query: 66 EDDALNNLPDLVVVSFEKFWKFVIQSV-------IQPLGYVLAEENNFESGLNIANSKNG 224
EDDA++ +P++ FE+ KF +SV + L + F + + G
Sbjct: 732 EDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGEQRG 791
Query: 225 TELPNA 242
++ P+A
Sbjct: 792 SDAPSA 797
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 75 HHPLHHQQY 49
HHPLHHQQY
Sbjct: 1363 HHPLHHQQY 1371
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 75 HHPLHHQQY 49
HHPLHHQQY
Sbjct: 1357 HHPLHHQQY 1365
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical protein
C38C10.5b protein.
Length = 1374
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 75 HHPLHHQQY 49
HHPLHHQQY
Sbjct: 1363 HHPLHHQQY 1371
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical protein
C38C10.5a protein.
Length = 1368
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -1
Query: 75 HHPLHHQQY 49
HHPLHHQQY
Sbjct: 1357 HHPLHHQQY 1365
>Z92812-3|CAB07282.2| 342|Caenorhabditis elegans Hypothetical
protein T03E6.3 protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 99 VVVSFEKFWKFVIQSVIQPLGYVLAEENNF 188
+V F+ FW F ++IQP+ ++ +E F
Sbjct: 220 IVRIFKPFWSFYFHNMIQPIIFMKLKEQEF 249
>Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical
protein T16G1.9 protein.
Length = 945
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +3
Query: 42 LQNIVDDEEDDALNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFESGLNIANSKN 221
L VD++ L+ LP V + E W F ++ + P V+ + + + G A+ ++
Sbjct: 591 LSTHVDEKNGPLLSTLPPFVTLCVEGTWPFEVERYVSPRVSVVIKFSTGDDGYLCASPES 650
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,325
Number of Sequences: 27780
Number of extensions: 291630
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -