Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b24r
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    27   2.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.8  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   5.0  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   5.0  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   8.7  

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 392 ISIGTIPNIQHCIK 351
           I I T PN+QHCIK
Sbjct: 209 IGITTFPNLQHCIK 222


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 55   LAAYANSTNSSSFLQTVDYLFP--HGCLCYISWYCVICCNLSTLCFSLKSGEI 207
            L  Y     +   +Q  D++    H CL  + W   I  +L + CFSLK+ EI
Sbjct: 965  LFPYLEPQEAELVIQIFDFISSDTHKCLQGLKW--AIPTSLDSACFSLKAKEI 1015


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 115 FPHGCLCYISWYCVICCNLSTLCFSLKSGEIAGQVLR 225
           FP   + Y+  YC  C NL T   S+  G++  Q+ R
Sbjct: 589 FPESLIPYLPVYCDACLNLGTHSESI--GDLEHQIRR 623


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 573 RNKRFNRISTCSIREQGY*KNIGTKFSC 490
           ++ + NR+  C+    GY  N G KF+C
Sbjct: 136 KSMQTNRLPGCTAESWGYHGNSGEKFNC 163


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 369 HTALHQESPILQSSSPN*MQVTSTYCDAT 283
           +T+LHQ   I  SSS N MQ +S    +T
Sbjct: 277 NTSLHQSFGIASSSSNNYMQTSSELTSST 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,243
Number of Sequences: 5004
Number of extensions: 59083
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)