Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b24f
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436...    29   4.0  
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763...    29   5.3  
11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496           28   7.0  

>03_01_0591 -
           4366400-4366558,4366782-4366985,4367078-4367152,
           4367240-4367394,4367476-4367596,4367720-4367794,
           4369435-4369572,4369655-4369765,4369844-4369948,
           4370327-4370405,4370561-4370622,4370698-4370763,
           4370840-4371024,4371095-4371173
          Length = 537

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 273 FPELQQIENTNPHHQNIVRRIYCQLGKCISIGTIPNIQHCIKNLLFCSHPPL 428
           F  LQQ   T P        +YC +G   S+G  P I    + L  C+HP L
Sbjct: 70  FQHLQQQLQTQPGSLPFDEIVYCNIGNPQSLGQKP-ITFFREVLALCNHPNL 120


>03_02_0340 +
           7635354-7635621,7635992-7636121,7636865-7636929,
           7637255-7637529,7640204-7640441,7641095-7641228,
           7641340-7641414,7641675-7641776,7642154-7642263,
           7642334-7642430
          Length = 497

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 DPFPELQQIENTNPHHQNIVRRIYCQLGKCISIGT 371
           D FP++  ++ T P   N    +YC+LG    +GT
Sbjct: 308 DEFPDVVVVDYTAPDSVNANAELYCKLGLPFVMGT 342


>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
          Length = 589

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 670 NSSSFLQTVDYLFPHGCLCYISWYCVICCNLSTLCFSLKSGEIAGQV 530
           N+ +FL  +      GCL  + W+  + C    LC +L +   + QV
Sbjct: 360 NAVAFLGPLMRAAERGCLQVVEWFVNLGCRDMELCLALTAATSSSQV 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,511
Number of Sequences: 37544
Number of extensions: 335731
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)