Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b24f
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    29   4.7  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    28   6.2  
U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger ...    28   8.2  
AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H...    28   8.2  
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    28   8.2  
AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchange...    28   8.2  
AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchange...    28   8.2  
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    28   8.2  

>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 662 ILLADCRLFIPPWLFMLYILVLCNLL*FEYTLLFIEKW*NSRSG 531
           I   + +L++PP L ++YIL+ C+       +  I+KW    +G
Sbjct: 501 IFRIESKLYLPPPLSLIYILLRCSTCMVLLIMWGIQKWLKKDAG 544


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = -3

Query: 670 NSSSFLQTVDYLFPHGCLCYISWYCVICCNLSTLCFSLKS 551
           ++SS+L   +Y+  +G +    +YC++  + S +CF+L S
Sbjct: 288 SASSYL---NYVIGYGSVFISFFYCIVATSHSVICFALSS 324


>U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger
           protein 2 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 PFPELQQIENTNPHHQNIVRRIYCQL 347
           P  E  Q+E  N H +N++  IY +L
Sbjct: 435 PIAEFLQVEKKNVHSKNMIEHIYSEL 460


>AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H
           exchanger isoform 6 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 PFPELQQIENTNPHHQNIVRRIYCQL 347
           P  E  Q+E  N H +N++  IY +L
Sbjct: 453 PIAEFLQVEKKNVHSKNMIEHIYTEL 478


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 PFPELQQIENTNPHHQNIVRRIYCQL 347
           P  E  Q+E  N H +N++  IY +L
Sbjct: 452 PIAEFLQVEKKNVHSKNMIEHIYSEL 477


>AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform a protein.
          Length = 538

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 PFPELQQIENTNPHHQNIVRRIYCQL 347
           P  E  Q+E  N H +N++  IY +L
Sbjct: 453 PIAEFLQVEKKNVHSKNMIEHIYTEL 478


>AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform b protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 270 PFPELQQIENTNPHHQNIVRRIYCQL 347
           P  E  Q+E  N H +N++  IY +L
Sbjct: 453 PIAEFLQVEKKNVHSKNMIEHIYTEL 478


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 673 TNSSSFLQTVDYLFPH--GCLCYISWYCVICCNLSTLCFSLK 554
           ++++ F++ + + F      +CY  W C+I   + TL  SLK
Sbjct: 11  SDNTWFVRIIHWFFQKCSAVICYCPWTCIILTIMLTLVLSLK 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,082
Number of Sequences: 27780
Number of extensions: 334161
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)