Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b23r
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    69   5e-12
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    68   8e-12
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    58   1e-08
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    38   0.007
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    38   0.007
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    38   0.013
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    30   2.6  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   3.4  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   5.9  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   5.9  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   5.9  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 69/252 (27%), Positives = 109/252 (43%), Gaps = 17/252 (6%)
 Frame = -2

Query: 720 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 541
           RI+GG++ + GA+  +A LV    NG+  +CGA+++ +   VTAAHC    + Q R F  
Sbjct: 37  RIIGGNSIDDGAN-WMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC--ALQLQTRSFVY 93

Query: 540 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN-- 367
                N  +     +     +H  YN  T  ND+A++  +       I+ + L    +  
Sbjct: 94  VREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKL 151

Query: 366 -----NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCARTFG----NNVIIA 214
                N             +S      N+Q  +  S+ +I++  C +T+      +V I 
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211

Query: 213 STLCVDGSNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-----QRGHPAGFAR 52
                 G+    T  GDSGGPL I  S G    IGITS+G A G      Q   P  + R
Sbjct: 212 GYQICAGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYG-ADGLDGVIDQGKFPGVYTR 270

Query: 51  VTSFNSWIRARI 16
           ++ +  WI+  I
Sbjct: 271 ISKYVPWIQGVI 282


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 6/237 (2%)
 Frame = -2

Query: 720 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTL 541
           R++GGS ++  + P    L+  L + R   CG SL+     +TAAHC+   R +   +++
Sbjct: 57  RLIGGSESSPHSWPWTVQLLSRLGHHR---CGGSLIDPNFVLTAAHCFAKDR-RPTSYSV 112

Query: 540 ALGTANIFSGGTRVTTSNVQMHGSYNMDTLHN-DVAIIN-HNHVGFTNNIQRINLASGSN 367
            +G     SG     T+ V +H  YN+    + D AI+  H  V  +   + I L S   
Sbjct: 113 RVGGHRSGSGSPHRVTA-VSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP- 170

Query: 366 NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAVCAR--TFGNNVIIASTLCVDG 193
                         ++   S  +    R++ + +++   C+    +   + + S LC   
Sbjct: 171 -AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGY 229

Query: 192 SNGR-STCSGDSGGPLTIGSGGSRQLIGITSFGSAQGCQR-GHPAGFARVTSFNSWI 28
           S G+  +C GDSGGPL     G  +L G+ S+G   GC R G P  +  V S ++WI
Sbjct: 230 SYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGI--GCARPGMPGVYGNVHSASTWI 284


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 63/242 (26%), Positives = 95/242 (39%), Gaps = 7/242 (2%)
 Frame = -2

Query: 720 RIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCW-RTRRAQARQFT 544
           R+VGG     GA P  A L    T      CGAS+L  T  +TAAHC+    R  + +  
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHH--CGASILDKTHLITAAHCFEEDERVSSYEVV 83

Query: 543 LALGTANIFSGGTRV-TTSNVQMHGSYNMDTLHNDVAIINHNHVGFTNNIQRINLASGSN 367
           +     N   G  ++     +  +  Y  D   +D+AI+   + G   N     +   S 
Sbjct: 84  VGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICLPSK 142

Query: 366 NXXXXXXXXXXXGRTSDAASGANNQQKRQVSLQVITNAV-CARTFG-NNVIIASTLCVDG 193
           +             +   + G    ++ Q +L  I N   C  +    + +  S  C   
Sbjct: 143 DFVYTPGRQCVV--SGWGSMGLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGY 200

Query: 192 -SNGRSTCSGDSGGPLTI-GSGGSRQLIGITSFGSAQGC-QRGHPAGFARVTSFNSWIRA 22
              G  +C GDSGGP       G+  L G+ S+G   GC Q+  P  +  V  + SWI A
Sbjct: 201 LEGGIDSCQGDSGGPFACRREDGAFVLAGVISWG--DGCAQKKQPGIYTMVAPYLSWISA 258

Query: 21  RI 16
            I
Sbjct: 259 II 260


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -2

Query: 231 NNVIIASTLCVDGSNGRSTCSGDSGGPLTI--GSGGSRQLIGITSFGSAQGCQRGHPAGF 58
           ++ I A+++ V   +   TC GDSGG L     + G   LI ITSFG+ +GC     A F
Sbjct: 216 DDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAITSFGT-RGCPSNMLARF 274

Query: 57  ARVTSF 40
            RV  +
Sbjct: 275 TRVDMY 280


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = -2

Query: 279 VSLQVITNAVCARTFGNNVIIASTLCVDGSNGRSTCSGDSGGPLTIGSGGSRQ--LIGIT 106
           ++L   T A C   +G ++   S  C      ++ CSGDSGG LT     S +  +I I 
Sbjct: 236 LTLATETLATCEENWGTSIPFDS-FCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIAIV 294

Query: 105 SFGS 94
           S+GS
Sbjct: 295 SYGS 298



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -2

Query: 705 SAANAGAHPHLAGLVIAL-TNGRTS----ICGASLLTNTRSVTAAHCWR 574
           +A N G   HLA   + +    R      ICG +L+T    +TAAHC++
Sbjct: 32  AAGNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHCFQ 80


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -2

Query: 723 TRIVGGSAANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHC 580
           T I+ G +AN+     LA ++    +G T++CG  L+  +  +T+AHC
Sbjct: 15  TSIINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHC 62


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = -2

Query: 321 SDAASGANNQQKRQVSLQVITNAVCARTFGNNVI---IASTLCVDGSNGRSTCSGDSGGP 151
           + AA+G NN      S +V +    A+ FG +     I +     GS G     G SGG 
Sbjct: 419 TSAANGGNNAGGGGSSAEVRSVGFGAQQFGGSQFARPIPAGGGGGGSGGYGAGGGGSGGY 478

Query: 150 LTIGSGGSRQLIGITSFGSA 91
              G+GG+R      S+GS+
Sbjct: 479 GAGGAGGARNSASNGSYGSS 498


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 496 GDPGASGEDVSCAKSEGELTSLGSPGPP 579
           G+PGA G+D    K +GE    G PGPP
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPP 226


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 450 HNDVAIINHNHVGFTNNIQRINLASGSNN 364
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 450 HNDVAIINHNHVGFTNNIQRINLASGSNN 364
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 450 HNDVAIINHNHVGFTNNIQRINLASGSNN 364
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = -1

Query: 415 WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRCCFGSQQP-TKTPSEPPGHYQRRL-RP 242
           +L +Q PAHQ  Q K+Q C      C      +C   ++ P      E    + R++ R 
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKCEKCAKHPHHHCKCEDQKEFNRKIVRA 589

Query: 241 HVWKQCDHC--LHP 206
              K CD C   HP
Sbjct: 590 LCPKTCDICNETHP 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,503,872
Number of Sequences: 27780
Number of extensions: 401186
Number of successful extensions: 1775
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)