Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b22r
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   2.8  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   3.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   4.8  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   6.4  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   6.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 VIEMCLFFHDLINVATC**SNFNIPY 107
           VIE+ LF HD      C  +N  IPY
Sbjct: 30  VIELGLFMHDCEGEMVCQSTNVKIPY 55


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 98  KYIKNAIQFNSMYV*FVVNRTEKLLS 21
           KY+  A+Q+NS  + F+   TE++LS
Sbjct: 438 KYMSVAVQYNSSKMNFMKGATEQVLS 463


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 171 HISITNPIKVSST*FRLKLLSLRNLKTILQYYQ 269
           H  + NP++ +ST F+L L+++ +   +LQ  Q
Sbjct: 614 HEFLNNPLQSNSTDFKLSLVNVYDCIAVLQDQQ 646


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 182 D*NVPFLSRPYKRCNVLVIQFQYSIRYDKYIKNAIQ 75
           D ++ +LS+P +  N L I F   + Y+K ++N I+
Sbjct: 115 DNSLAYLSKPEESYNFLTIYFSTLLSYEK-VENLIK 149


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 113 SIRYDKYIKNAIQFNS 66
           S+R D+Y+  AIQFNS
Sbjct: 174 SLRKDQYVDLAIQFNS 189


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 112  EY*NWITNTLQRL*GRERKGTFQSQIQL 195
            EY N ITN L RL    + G  +S++Q+
Sbjct: 2666 EYGNSITNDLSRLCADVKSGKNESELQV 2693


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,538
Number of Sequences: 5004
Number of extensions: 29185
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)