Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b22f
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17841 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q0TYL3 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   5.6  
UniRef50_Q9JZ92 Cluster: Recombination protein recR; n=4; Neisse...    33   9.7  

>UniRef50_Q17841 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 394

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 344 FDAQKKYISRSVKIISILQLDSLKYILFSGISTLN*STVKFTHC 213
           F  QK+ ++ S K +S  QL  L + +F+ IS     T+K+ +C
Sbjct: 48  FKCQKRVVAYSAKFLSNHQLKKLTHFIFTSISIFPNGTIKWPNC 91


>UniRef50_Q0TYL3 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 383

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 33  PRHAKYVHGSSELASREEHSKGCTHVINGFQCCTDLVQRSRTPP 164
           P HA  +  +++LA  E+  K  T V++  QC    +  SRTPP
Sbjct: 225 PTHAANLESATDLADNEQPPKRLTTVLSCIQCTLANLPCSRTPP 268


>UniRef50_Q9JZ92 Cluster: Recombination protein recR; n=4;
           Neisseria|Rep: Recombination protein recR - Neisseria
           meningitidis serogroup B
          Length = 206

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 178 DTYCYGGVRERCTKSVQHWKPLITCVQPLECSSLEANSEEPWTYFACLGKVYDGL 14
           +T+C GG+ + C    +  + L+    P + S++EA +     YF  +G++   L
Sbjct: 64  NTFCEGGLCDICADETRDGRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTAL 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,516,913
Number of Sequences: 1657284
Number of extensions: 12099643
Number of successful extensions: 22754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22749
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)