Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19b19r
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0603 - 4350124-4350590,4350995-4353608 33 0.38
03_05_1129 - 30595580-30595771,30596119-30597162 31 1.2
11_06_0610 - 25449085-25453284 31 1.5
11_06_0138 + 20522197-20522670 31 1.5
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 30 2.7
05_01_0545 - 4756266-4757510 29 3.5
01_01_0490 + 3620523-3623403,3623524-3623996 29 3.5
07_03_0442 + 18261928-18261957,18264217-18264279,18264847-182648... 29 4.7
04_04_0207 + 23602065-23604315,23604611-23605116 29 4.7
02_05_0239 + 27101440-27101904 29 6.2
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 8.1
07_03_1001 - 23224372-23224385,23225451-23227374 28 8.1
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 28 8.1
>06_01_0603 - 4350124-4350590,4350995-4353608
Length = 1026
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 768 PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQG 667
PE R+R+ E LSN + G P ++G+ P+ G
Sbjct: 349 PEMSRLRRLERLYLSNNLLAGEIPRSIGEMPHLG 382
>03_05_1129 - 30595580-30595771,30596119-30597162
Length = 411
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/41 (48%), Positives = 21/41 (51%)
Frame = +2
Query: 425 ATSLRMVAGDQFGCITIELVSTLVPPLKSVTEPRTTVTLVP 547
A SLR V G G I +EL S PP S E R VTL P
Sbjct: 179 AWSLRDVRGSPTGSIEVELASA-APPEASGVEARCVVTLHP 218
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Frame = +2
Query: 482 VSTLVPPLKS-------VTEPRTTVTLVPWLVPSNQQ*AAVNSLLVVTSEAPQTPVRGCP 640
V +++PP+KS ++EP T + P + +++ A +S P+TP + P
Sbjct: 1037 VESVLPPVKSSPPHAPVISEPPPTKSSPPQVPVTSEPPPAKSSPPHEPISPPETPEKSYP 1096
Query: 641 LTTMVISRPP**GNCPRVAGEPPTILVLLSPASSAL 748
+T S PP + P+ A PPT L PA+ +L
Sbjct: 1097 PSTPEESSPP---SVPK-ASSPPTEKSLPPPATVSL 1128
>11_06_0138 + 20522197-20522670
Length = 157
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 59 WQPRPEPNDVIPIKIGRLFLVTTRGPPESPRQVPTPP 169
W P P P DV+P+ + F+ P PR+ PTPP
Sbjct: 81 WLPSPPPGDVVPM-LDSYFVAARWLAP--PRRPPTPP 114
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 186 LCTSGRGGVGTCRGDSGGPLVVTRNNRPILIGITSFGSGLGCQVNLPAAYAR 31
LC++ GT S PLV++ + ++ G+T+ GS + AA+AR
Sbjct: 77 LCSAAAAASGTAAASSNLPLVLSIHAHALVSGLTADGSVASHLLTAYAAFAR 128
>05_01_0545 - 4756266-4757510
Length = 414
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 771 VPEA-ERIRKAEEAGLSNTRIVGGSPATLGQFP 676
VP+A R+R+ E LSN R+VG P+ + P
Sbjct: 138 VPDALRRLRRLHELDLSNNRLVGAFPSAVLDLP 170
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 768 PEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLI-TIVVNG--QPRTGVC 616
PE K GL+ T I G PATLGQ L I T +++G P G C
Sbjct: 220 PEIGNCSKLTMLGLAETSISGPLPATLGQLKNLNTLAIYTALLSGPIPPELGRC 273
>07_03_0442 +
18261928-18261957,18264217-18264279,18264847-18264897,
18265937-18266002,18266813-18266908,18266985-18267086,
18267200-18267297,18267409-18267581,18267695-18267735,
18267823-18267910,18268025-18268084,18268206-18268260,
18268617-18268683,18269260-18269356,18269659-18269720,
18269808-18269850,18270002-18270111,18270477-18270713
Length = 512
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 831 VLLHCLCMKXPVYGYLTKYGVP--EAERIRKAEEAGLSNTRI 712
+ LH +C ++GY TK +P E +RKA+ A + + I
Sbjct: 53 LFLHHICFYSNIFGYETKKTIPLQEVTDVRKAKTAAIFHNAI 94
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = -2
Query: 798 VYGYLTKYGVPEAERIRKAEEAGLSNTRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGV 619
V G +PE R R+ LS + G PA+LG P +L I V+ TG
Sbjct: 406 VSGNALSGAIPELTRCRRLVSLSLSGNALTGPIPASLGGLP----VLTYIDVSSNGLTGA 461
Query: 618 CGASL 604
A L
Sbjct: 462 IPAEL 466
>02_05_0239 + 27101440-27101904
Length = 154
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 86 VIPIKIGRLFLVTTRGPPESPRQVPTPP 169
V+ + + LF RGPP P PTPP
Sbjct: 23 VLGVWLCYLFQAVARGPPPDPPPPPTPP 50
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 514 HGTKNDRYARALVGAIEPAVSSCQ*SVSGN--KRSSADARAWLSI 642
H T DR ++ + PA+ + Q VS +R+ AD+R W S+
Sbjct: 647 HDTLKDRTILKIIRVLPPAILNAQTKVSSAVWERAIADSRFWWSL 691
>07_03_1001 - 23224372-23224385,23225451-23227374
Length = 645
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 729 LSNTRIVGGSPATLGQFPYQGGLLITIVVNGQPRTGVCGASLVTTNRLLTAAHCW 565
LSN +V + GQF YQG + V+G G ++T AH +
Sbjct: 20 LSNDVVVASAAGGDGQFTYQGFAAANLTVDGLATVTASGLLVLTNFTYQAKAHAF 74
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 28 NSGICGRQVHLATETRAK*CNTNQD 102
NS CGRQ+H+AT + +TN D
Sbjct: 176 NSHFCGRQLHVATFIKKSERSTNND 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,933,244
Number of Sequences: 37544
Number of extensions: 599760
Number of successful extensions: 2370
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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