Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b13r
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical pr...    59   4e-09
U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    29   3.3  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    29   4.4  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    29   5.8  
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical
           protein R03E1.2 protein.
          Length = 324

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 29/51 (56%), Positives = 34/51 (66%)
 Frame = -2

Query: 752 SADYAAIFNIILWFGVVFTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKKD 600
           S+DY AIF I L   V+    LI IV  +  +DP +DSIIYRMT TRMKKD
Sbjct: 274 SSDYPAIFAIFLGLVVILVVALIYIVVGMASIDPEKDSIIYRMTTTRMKKD 324


>U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical
           protein T14F9.2 protein.
          Length = 395

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 141 GFMTSNRDQRMTITPQTEYSACLSYYLHTET----NYVLYNYSELLNRILNNPCK*QYPN 308
           GF      +R+ +TP+ E+   L   + TET    N   ++YS + +  + N C  QYPN
Sbjct: 210 GFRYDKSLERLDLTPEAEHHLPLHLPIFTETLDFNNPHKHDYSRVFSCYVRNDCT-QYPN 268


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -1

Query: 558 VQYLFLYKFYGCFFY--QKTHSISIVTF*ICF--SFYNKLAFPRS 436
           V Y  LY + GCFFY  + +++  +V   +C+  S+Y+ + F  S
Sbjct: 133 VIYYILYDYLGCFFYYEKSSYTFWLVDTPLCYSVSWYSDILFNNS 177


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 800 VSGNVELKNSVDEDGYSADYAAIFNIILWFGVVFTFTLIAIV 675
           + G++ L+ +    G++ ++  +FN   WF + F F  + IV
Sbjct: 182 IFGSILLRATGTIFGWTNNFLVMFNTFFWFSICFGFNSVLIV 223


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 842  VTTDIVHTRRAIRSVSGNVELKNSV 768
            VTTD+V  R+ I  V+G+V + N V
Sbjct: 985  VTTDLVQIRQVILEVNGHVSMSNEV 1009


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 749 ADYAAIFNIILWFGVV---FTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKK 603
           AD A +FN+++W  VV    T T+   VY   ++   R++  Y  T  RM K
Sbjct: 191 ADPATMFNVLIWLSVVIVTLTSTIATTVYLQRNL---RENEHYSETVVRMHK 239


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 749 ADYAAIFNIILWFGVV---FTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKK 603
           AD A +FN+++W  VV    T T+   VY   ++   R++  Y  T  RM K
Sbjct: 191 ADPATMFNVLIWLSVVIVTLTSTIATTVYLQRNL---RENEHYSETVVRMHK 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961,511
Number of Sequences: 27780
Number of extensions: 420552
Number of successful extensions: 1024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)