Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19b11f
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 31 1.4
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845... 29 3.3
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 4.4
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 29 4.4
11_06_0156 + 20748472-20748951 29 5.8
10_02_0061 - 4812903-4812940,4813140-4813536 29 5.8
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 29 5.8
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 5.8
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 28 7.6
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 307 ERVLVSKEAPQMEVLPFVSAITSPARWG*APAFAAEPPTILV 182
E + AP LPF S + + AR G APA +A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>09_04_0259 -
16182190-16182360,16183185-16183262,16184431-16184586,
16184913-16185092,16185875-16186027
Length = 245
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 88 QKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPG 189
++ PS T T+ V PGP V D RKPL+ T PG
Sbjct: 182 KEKPSIGTVTA--VGPGPLVEDGSRKPLSIT-PG 212
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 425 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 333
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 82 SWQKSPSNSTTTSRSVSPGPRVLDAPRKPLTSTVPGLWVVLPQTLVLTPI 231
+W K P N V+PG ++DA P +PGL P TL TP+
Sbjct: 36 AW-KRPGNGAAVPVVVAPGSPIMDADSWP---ALPGLASPPPTTLTPTPM 81
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 609 CWLPKQHRRSFRSRQPRPKY 550
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 64 WRWRPWSW---QKSPSNSTTTSRSVSPGPRVLDAPRKP 168
WRWR W W + ++ST S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 204 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTAN 383
A N GA A V+ + +GR S+ +L + + AA WR+RR Q AL
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRP 104
Query: 384 IFS---GGTRVTTSNVQMHGSYNM 446
+ + GG+ TS + G M
Sbjct: 105 VAADGRGGSGEGTSRARGRGEEGM 128
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 276 RWKFCHSSVRSQVQQDGGEHQRLRQNHPQSW 184
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +3
Query: 243 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 422
VIA T + + S +NT S A C RR+ +A G A I G+ + S+
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217
Query: 423 QMHGSYNMDTLHNDVA 470
G + L +VA
Sbjct: 218 AASGERKIGILAFEVA 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,196,258
Number of Sequences: 37544
Number of extensions: 473479
Number of successful extensions: 2353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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